BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21320.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472365 jgi|Araly1|472365|fgenesh2_kg.1__2319__AT1G21320.1 1356 0.0
> Ahg472365 jgi|Araly1|472365|fgenesh2_kg.1__2319__AT1G21320.1
Length=1351
Score = 1356 bits (734), Expect = 0.0
Identities = 930/1021 (91%), Gaps = 28/1021 (3%)
Strand=Plus/Plus
Query 22 AATTATATATATACAAGTACTTCCCCTAATCATCACATAATCATTGTTCTTCACTAAATT 81
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AATCATATATATACAAGTACTTCCCCTAATCATCACATAATCATTGTTCTTCACTAAAAT 60
Query 82 CATCATCACACA----TACACATATACATATACTATTCATCTCATAAAGTGGATTCTATG 137
|||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 61 CATCATCACACACACATACACATATATATATACTATTCATCTCA-AA-GTGGATTCTATG 118
Query 138 GATAATAGATCGCCAAGATCAAGAGGAAACATGGGTCCGAAACCAACACCACTGAAAGTC 197
|||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||
Sbjct 119 GATAATAGATCGCCAAGATCAAGAGGAATCTTGGGTCCGAGACCAACACCATTGAAAGTC 178
Query 198 CGTGGAGATTCGCACAAGATTATCAAGAAGCCACCACTAGCGCCGCCACACCCGCAACCA 257
|||||||||||||||||||| ||||||||||||||||| || | ||| || |||||||||
Sbjct 179 CGTGGAGATTCGCACAAGATCATCAAGAAGCCACCACT-GC-C-GCCTCAGCCGCAACCA 235
Query 258 CAACCACCACAAACCCATCAGCAAGAACCGTCGCAATCTCGGCCCCCACCTGGTCCCGTG 317
||||||||||||| |||||||||||||||||||||| | | ||| |||| |||||||||
Sbjct 236 CAACCACCACAAATCCATCAGCAAGAACCGTCGCAACCGCAGCCTCCACGTGGTCCCGTT 295
Query 318 AACATATACACAGTAACTCCCA-GAATTATCCATACACACCCTAATAACTTCATGACATT 376
| ||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 296 ATCATATACACCGTATCTCCCAAGA-TTATCCATACACACCCTAATAACTTCATGACATT 354
Query 377 GGTCCAACGTCTCACAGGTCAAACCTCTACCTCCACAACATCATCCTCCTCCTCTTCATC 436
||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 355 GGTTCAACGTCTCACAGGTAAAACCTCTACCTCCACAACATCATCCTCCTCTTCTTCGTC 414
Query 437 CACGTCGGAACCAAAAGACACGTCAACAATGGTTGATACATCTCATGGGTTGATATCTCC 496
||||| | ||||||||||| |||||||| | |||||||||||||||| |||||||| ||
Sbjct 415 TACGTCAGCACCAAAAGACAAGTCAACAACGATTGATACATCTCATGGTTTGATATCCCC 474
Query 497 GGCGGCTCGGTTTGCTGTTACAGAGAAGGCTAATATC-TCAAACGAACTAGGGACATTTG 555
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 475 GGCGGCTCGGTTTGCTGTTACAGAGAATGCTAATA-CATCAAACGAACTAGGGACATTTG 533
Query 556 TTGGAGGCGAAGGGACTATGGATCAATATTATCATCATCATCATCAAGAACAACCACATC 615
| ||||||| |||| ||||||||||||||||| | ||||||||||| |||||| | ||
Sbjct 534 TGGGAGGCGTAGGGGCTATGGATCAATATTAT--T-ATCATCATCAACAACAAC-A--TC 587
Query 616 AAAATCGAGGGTTCGAGCGGCCAAGTTTTCACCATGCTGGGATTTTATCGCCGGGACCTT 675
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AAAATCGAGGGTTCGAAAGGCCAAGTTTTCACCATGCTGGGATTTTATCGCCGGGACCT- 646
Query 676 A-TTCTCTGCCGTCGGTATCACCGGACTTCTTTTCCACTATTGGACCAACCGATCCACAA 734
| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 647 ACTTCTCTGCCGTCGATATCACCGGACTTCTTTTCCACGGTTGGACCAACCGATCCACAA 706
Query 735 GAAGGTACACCATATTTGATTCCTTCAGGTGATATGCACAGTTATTTATCACAGGATGAG 794
||||||||||||||| |||| |||||||| | |||||||||||||||||||| |||||||
Sbjct 707 GAAGGTACACCATATGTGATGCCTTCAGGCGGTATGCACAGTTATTTATCACGGGATGAG 766
Query 795 GATCGAGGTATCCCCCATTCAGTAAAGGATACTAGAAGTATTGGATCAGCTTATGACC-G 853
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |
Sbjct 767 GATCGAGGTATCCCCCATTCAGTAAAGGATACCAGAACTATTGGTTCAGCTTATGACCAG 826
Query 854 CTACCTGCAGAGTA-TGCAAACGTTTTTTGTGCCATCTGAAGAAGCTGGTCCATTTAATG 912
|||||| | | || | |||||| || ||||||||||||||||||||| |||||| |||
Sbjct 827 -TACCTG-A-A-TAAT-CAAACGCCTTCTGTGCCATCTGAAGAAGCTGGGCCATTTGATG 881
Query 913 GTGTTGGCATGGTACGACAAGGAGGTTCCAACATGATGCCTGGTCCGTCCATGGGTGAGC 972
|||||||||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct 882 GTGTTGGCATGGGACGACAAGGAGGTAACAACATTATGCGTGGTCCGCCCATGGGTGAGC 941
Query 973 TCATGGCTGGGTGTGGTGGGAGTTTGCCTTCAGATTTCAGGCCAAATGGTCGGGATATGG 1032
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 942 TCATGGCTGGGCGTGGTGGGAGTTTGCCTTCAGATTTCAGGCCAAATGGTCGGGCTATGG 1001
Query 1033 G 1033
|
Sbjct 1002 G 1002
Score = 418 bits (226), Expect = 6e-116
Identities = 318/357 (89%), Gaps = 27/357 (8%)
Strand=Plus/Plus
Query 1065 GGCCGGGAACCACATCCTCTACCTCCAGATGTATCCAACACTCTGTATGTTGAAGGACTT 1124
||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1001 GGCCGGGAACCAC-T--TCT---TCCAGATGTATCCAACACTCTATATGTTGAAGGACTT 1054
Query 1125 CCTTCTAATTGCTCAAGAAGGG--AA-G---T-A-----T--C---CC---A-TATATTT 1163
|||||||||||||||||||||| || | | | | | || | | |||||
Sbjct 1055 CCTTCTAATTGCTCAAGAAGGGAAAATGTTTTAAGCTGTTCACTGTCCTTAACTGTATTT 1114
Query 1164 CGGCCTTTTGTGGGATATAGAGAAGTAAGACTTGTGACCCAAGATTCAAAACACAGGAGT 1223
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1115 CGGCCTTTTGTGGGATATAGAGAAGTAAGACTTGTGACCAAAGATTCAAAACATAGGAGT 1174
Query 1224 GGAGATCCTACTGTTCTGTGTTTTGTTGATTTTGAAAACTCTGCCTGTGCAGCAACTGCT 1283
|||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1175 GGAGATCCTATTGTTCTTTGTTTTGTTGATTTTTAAAACCCTGCCTGTGCAGCAACTGCT 1234
Query 1284 CTGAGCGCTTTGCAAGACTATCGAATGGATGAAGACGAACCCGATTCCAAGATTTTGCGG 1343
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1235 CTGAGCGCTTTGCAAGGCTATCGAATGGATGAAGACGAATCCGATTCCAAGATTTTGCGG 1294
Query 1344 CTCCAATTTTTCAGAAACCCAGGTCCAAGACCAGGACAGCGTGGAGGAAGAAGGTGA 1400
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1295 CTCCAATTTTCCAGAAACCCAGGTCCAAGACCAGGACAACGTGGAGGAAGAAGGTGA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5