BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21327.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921104 jgi|Araly1|921104|scaffold_102385.1 411 2e-114
> Ahg921104 jgi|Araly1|921104|scaffold_102385.1
Length=306
Score = 411 bits (222), Expect = 2e-114
Identities = 250/264 (95%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 1 ATGTCACAACCAAAAACAAGTGGAAGAACTTTTGGATTCCTGAAACCATTTATGCGGCTG 60
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 23 ATGTCACAACCAAAAACAAATGGAAGAACCTTTGGATTCCTGAAACCATTTATGCGGCTG 82
Query 61 TGTATGTGCTTTGACGTGGCGGCGGAAGGTGAGCAACGAGGAAGATCTAAGAAAGTGACA 120
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 83 TGTATGTGCTTTGACGTGGCGGTGGAAGGTGATCAACGAGGAAGATCTAAGAAAGTGACA 142
Query 121 AGGAAGAGCAGTTCCATCCACTCAATAAAATCTTCTCCGGCTAATTCTTCCGGTTGTAGT 180
|||||||| || |||||||||||||||||||| ||||| ||| |||||||||| |||||
Sbjct 143 AGGAAGAGTAGCTCCATCCACTCAATAAAATCCTCTCCAGCTTATTCTTCCGGCAGTAGT 202
Query 181 TCGATGGTAGAGGAAGACAGAGATGAGAAGATTAAAGATGTTATCCTCTATTGTAAGATG 240
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 203 TCGATGGTAGATGAAGACAGGGATGAGAAGATTAAAGATGTTATCCTTTATTGTAAGATG 262
Query 241 AATTCACCAATTAATTTCCGCTGA 264
||||||||||||||||||||||||
Sbjct 263 AATTCACCAATTAATTTCCGCTGA 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5