BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21340.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921105 jgi|Araly1|921105|scaffold_102386.1 1188 0.0
Ahg327681 jgi|Araly1|327681|fgenesh1_pm.C_scaffold_6002901 100 1e-20
Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1 76.8 2e-13
> Ahg921105 jgi|Araly1|921105|scaffold_102386.1
Length=827
Score = 1188 bits (643), Expect = 0.0
Identities = 741/788 (94%), Gaps = 7/788 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCCGTACATTGGACACAACAGCTA-C--CAGCAGCACCAGTTTCCGTTGCCGGAG 57
||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 22 ATGTTGCCGTACATTGGACACAACAGCTACCTGCAGCAGCACCAGTTTCCGTCGCCGGAG 81
Query 58 ATGGAAATTCCGGAGAAGTGGAAGCTTTCTTACGAACAAGAGGCTATTACTGCTCCGGCT 117
||||||||||||||||| ||||||||||| || | ||||||||||| |||||||||||||
Sbjct 82 ATGGAAATTCCGGAGAAATGGAAGCTTTCGTATGGACAAGAGGCTACTACTGCTCCGGCT 141
Query 118 TGTCCTCGTTGTGCATCGTCCAACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TGTCCTCGTTGTGCATCGTCCAACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT 201
Query 178 CAGCCTAGATACTTCTGCAAGGGTTGCCGTCGTTACTGGACGAAAGGCGGTTCTCTCCGC 237
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 202 CAGCCTAGATACTTCTGCAAGGGTTGCCGTCGTTACTGGACTAAAGGCGGTTCTCTCCGT 261
Query 238 AACATTCCTGTAGGTGGAGGCTGTCGCAAGAGAAGTCGAAGCAGACAGAACAGTCACAAA 297
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 262 AACATTCCTGTAGGTGGAGGCTGTCGCAAGAGAAGCCGCAGCAGACAGAACAGTCACAAA 321
Query 298 AGGTTTGGCCGGAACGAGAATCGGCCAGATGGTCTTATTAACCAAGATGATGGATTCCAG 357
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 322 AGGTTTGGTCGGAACGAGAATCGGCCTGATGGTCTTAATAACCAAGATGATGGATTACAG 381
Query 358 TCCAGCCCTCCTGGTTCTGATATTGATTTGGCTGCGGTTTTCGCACAATATGTGACTGAT 417
||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 382 TCCAGCCCTCCTGGTCCTGATATTGATTTGGCTGCGGTTTTCGCACAGTACGTGACTGAT 441
Query 418 CGGAGCCCTTCTAGTACAGATAATACTACTGGATCCGATCAAGATTCACCGATAACAACA 477
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 442 GGGAGCCCTTCTAGTACAGATAATACTACTGGATCCGAGCAAGATTCACCGATAACAACA 501
Query 478 ACCACTCATGCTTTAGAATCTTTGAGTTGGGATATCTGCCAAGAAACTGATGTGGATCTT 537
|| |||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 502 ACAACTCATACTTTAGATTCCTTGAGCTGGGATATCTGCCAAGAAACTGATGTGGATCTT 561
Query 538 GGATTCTACGGGGAATTCAATAATCTAACTCA-GAAGACCAAAGAGGATCAA-GAAGTAT 595
|||||||||| ||| |||||||||||||| || ||||||| |||| |||||| || | |
Sbjct 562 GGATTCTACGAGGAGTTCAATAATCTAAC-CAAGAAGACCGAAGAAGATCAACGAGGG-T 619
Query 596 TTGGTCAGTTTCTCCAAGAAGATCGAGAGGAGATCTTCGAGTTCCAGGGTTTACTCGATG 655
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGGTCAACTTCTTGAAGATGATCGAGAGGAGATCTTCGAGTTCCAGGGTTTACTCGATG 679
Query 656 ACAAAGAGATTCAAGAGATCCTGGAATGCTCATTCTCAGAGGAGCCAGACCAGTTAGTTT 715
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 680 ACAAAGAGATTCAAGAGATCCTGGAATGTTCATTCTCAGAGGAGCCAGACCAGTTAATTT 739
Query 716 CTCAGGGGAGCTTCATGATCAATGGTGATAACTGGAGTTCAACAGATCTTACCAGGTTCG 775
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 740 CTCAGGGGAGCTTCATGGTCAATGGTGATAATTGGAGTTCAACAGATCTTACCAGATTCG 799
Query 776 GGATTTGA 783
||||||||
Sbjct 800 GGATTTGA 807
> Ahg327681 jgi|Araly1|327681|fgenesh1_pm.C_scaffold_6002901
Length=1719
Score = 100 bits (54), Expect = 1e-20
Identities = 100/122 (82%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 138 CAACACCAAGTTTTGTTATTACAACAACTACAGCTT-GTCTCAGCCTAGATACTTCTGCA 196
|||||||||||||||||||||||||||||||||||| | | |||||||| ||||| || |
Sbjct 1056 CAACACCAAGTTTTGTTATTACAACAACTACAGCTTAG-CACAGCCTAGGTACTTGTGTA 1114
Query 197 AGGGTTGCCGTCGTTACTGGAC-GAAAGGCGGTTCTCTCCGCAACATTCCTGTAGGTGGA 255
|| ||| || | || ||||| ||| || || |||||||| ||| | || ||||| |||
Sbjct 1115 AGTCTTGTCGGAGATATTGGACTGAA-GGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGA 1173
Query 256 GG 257
||
Sbjct 1174 GG 1175
> Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1
Length=545
Score = 76.8 bits (41), Expect = 2e-13
Identities = 68/81 (84%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 139 AACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT-CAGCCTAGATACTTCTGCAA 197
|||||||||||||||||||||||||||||||| ||| || || || | |||||||||||
Sbjct 97 AACACCAAGTTTTGTTATTACAACAACTACAGTTTG-CTTCAACCGCGCTACTTCTGCAA 155
Query 198 GGGTTGCCGTCGTTACTGGAC 218
| || ||| | ||||||||
Sbjct 156 GAACTGTCGTAGATACTGGAC 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5