BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21350.3
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313028 jgi|Araly1|313028|fgenesh1_pm.C_scaffold_1001808 1110 0.0
> Ahg313028 jgi|Araly1|313028|fgenesh1_pm.C_scaffold_1001808
Length=762
Score = 1110 bits (601), Expect = 0.0
Identities = 715/768 (93%), Gaps = 15/768 (2%)
Strand=Plus/Plus
Query 31 ATGGCTGCCTCCACCGTCGTAACCACCGTGACACACGGAGCTTCATCT-ATACTTCCTTC 89
|||||||||||||||| |||||||||||||||| |||||||||||| | | |||||||||
Sbjct 1 ATGGCTGCCTCCACCGCCGTAACCACCGTGACATACGGAGCTTCATATCA-ACTTCCTTC 59
Query 90 ACGAACTGCATTAGCAGTCTCTTCCCGGAGGTTTTCT-TCATTCTCGCCGTC---GAGGT 145
|||||| ||||||||| || ||||||||| ||||| | |||||||||||| ||||
Sbjct 60 ACGAACCGCATTAGCAATCAATTCCCGGAGACTTTCTAT-ATTCTCGCCGTCAAAAAGGT 118
Query 146 TGGACTTCAGTAATCTGCGGCGGAGAGTCAATGCACCATCGCC--GAGGCGCCTCGTGGT 203
| ||| |||||||||||||||||||||||||||||||| |||| | |||| | ||||||
Sbjct 119 TAGACCTCAGTAATCTGCGGCGGAGAGTCAATGCACCACCGCCAAGTGGCG-C-CGTGGT 176
Query 204 TCGCGCCGCTAGAACTGAGTCAGCCGGAGTAAAACTGGGAGCTAGAGCTCCCAATTTTGA 263
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 177 TCGAGCCGCTAGAACTGAGTCAGCCGGAGTAAAATTAGGAGCTAGAGCTCCCAATTTTGA 236
Query 264 GCTTCCGGAGCCGCTCACTGGAAACTTATGGAAATTAGAAGATTTTGAACTGTATCCGTC 323
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 237 GCTTCAAGAGCCGCTCACTGGAAACTTATGGAAATTAGAAGACTTTGAACTGTATCCATC 296
Query 324 TCTACTGGTAATGTTCATCTGCAATCATTGCCCGTTTGTGATTCATTTaaaaaaaGACAT 383
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 297 TCTACTGGTAATGTTCATCTGCAATCATTGCCCGTTTGTGATTCACTTGAAGAAAGACAT 356
Query 384 TGTAAAGCTATGCAATTTCTATATGAAGAAAGGTCTTGCTGTTGTTGCAATATCTTCAAA 443
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGTAAAGCTCTGCAATTTCTATATGAAGAAAGGTCTTGCTGTTGTTGCAATATCTTCAAA 416
Query 444 TTCTGTGGTAACTCATCCTCAGGATGGGCCTGAGTTCATGGCAGAGGATGCAAAAGTTTT 503
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 TTCTGTTGTAACTCATCCTCAGGATGGGCCTGAGTTCATGGCAGAGGATGCAAAAGCTTT 476
Query 504 CAAATACCCATTTCCTTACTTATATGATGAGTCACAAGAGGTTGCAAGAGAATTTGGAGC 563
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 CAAATACCAATTTCCTTACTTATATGATGAGTCACAAGAGGTTGCCAGAGAATTTGGAGC 536
Query 564 TGTTTGTACACCTGAGTTTTTCTTGTATAAGAAGGATGGTCGTAGACCATTTGAGCTGGT 623
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TGTTTGTACCCCTGAGTTTTTCTTGTTTAAGAAGGATGGTCGTAGACCATTTGAGCTGGT 596
Query 624 CTATCATGGTCAATTTGATGATTCCCGGCCTAGCAGTAAC-TCACCAGTAACCGGGAGGG 682
||||||||| || |||||||||||||||||||||| |||| | ||||||||| |||||||
Sbjct 597 CTATCATGGCCAGTTTGATGATTCCCGGCCTAGCAATAACAT-ACCAGTAACTGGGAGGG 655
Query 683 ATCTAAGCCTGGCGATTGATCTTTCCCTTAGCTGTCAACCAATACCATCAAATCAAAAGC 742
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 656 ATCTAAGCCTGGCGATTGATCTTGCCCTTAGCTGTCAACCAATACCATCAAATCAAAAGC 715
Query 743 CAAGTGTTGGTTGCAGCATAAAGTGGCA-CCCAGAAACAAAGTCATGA 789
|||||||||||||||||||||||||||| ||| |||||| |||| |||
Sbjct 716 CAAGTGTTGGTTGCAGCATAAAGTGGCATCCC-GAAACAGAGTCGTGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5