BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21360.1 Length=1055 Score E Sequences producing significant alignments: (Bits) Value Ahg911973 jgi|Araly1|911973|Al_scaffold_0001_2227 1066 0.0 > Ahg911973 jgi|Araly1|911973|Al_scaffold_0001_2227 Length=669 Score = 1066 bits (577), Expect = 0.0 Identities = 641/672 (95%), Gaps = 3/672 (0%) Strand=Plus/Plus Query 114 atgaagagaaagagatacgagatggagaagaagaagaagacagagatTCAAACCGCCATT 173 ||||||||||||||||||||||| | | ||||||||||||||||| |||||||||| ||| Sbjct 1 ATGAAGAGAAAGAGATACGAGAT-G-G-AGAAGAAGAAGACAGAGCTTCAAACCGCTATT 57 Query 174 GAAGAGCTCTCTGTTTTCATCGTAACTAAACCTGCAGATAAGACTGAGGCTACACATATA 233 |||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct 58 GAAGAGCTCTCTCTTTTCATCGTAACTAAACCTGCAGATAACACTCAAGCTACACATATA 117 Query 234 CCCTTGAGGCCTATTCTCTCCTTCTGCAGCTTAATCATCCAAGTTCTTGATAAGATAGGA 293 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 CCCTTGAGGCCTCTTCTCTCCTTCTGCAACTTAATCATCCAAGTTCTTGATAAGATAGGA 177 Query 294 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAATTT 353 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 178 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAAGTT 237 Query 354 TATGAAACAGATTCCTGTGTTTACTCGAATTTGGCTGAGATTCTGAAGAAAGAAAAGGAG 413 | |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 238 TGTGAAACAGATTCGTGTGTTTACTCCAATTTGGTTGAGATTCTGAAGAAAGAAAAGGAG 297 Query 414 GAGGGAACATCCAAGATGGTTGCTAGTTGTGGTAGAGCTCTTTTTTGGCTCACTAGGACA 473 || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 298 GAAGGAACATCCAAGATGGTTGCTAGTTGCAGTAGAGCTCTATTTTGGCTCACTAGGACA 357 Query 474 ATGGATTTTACTGCGGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 533 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATGGATTTTACTTCTGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 417 Query 534 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 477 Query 594 GCTGCTTTCAAAGTGTGTTTGAAGCTGGTGCCTGACAACAAGACGTTCATGGAAGCGATC 653 |||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |||||| Sbjct 478 GCTGCTTTCAAAGTTTGTCTGAGGCTAGTGCCTGACAACAAGACGTTCATGGACGCGATC 537 Query 654 GGTGCAAGAGACGAGAGCTATGATACCTTAAGAGAAGACATTGATACCTTGAGCTCATTG 713 ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 538 GGTGCAAGAGACGAGAGTTATGATACCTTAAGAGAAGACATCGATACCTTAAGCTCATTG 597 Query 714 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAACAATACGGGTTGAGCAGATTA 773 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 598 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAGCAATACGGGTTGAGCAGATTA 657 Query 774 AGATCGATGTAG 785 |||||||||||| Sbjct 658 AGATCGATGTAG 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39266604510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5