BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21360.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911973 jgi|Araly1|911973|Al_scaffold_0001_2227 1066 0.0
> Ahg911973 jgi|Araly1|911973|Al_scaffold_0001_2227
Length=669
Score = 1066 bits (577), Expect = 0.0
Identities = 641/672 (95%), Gaps = 3/672 (0%)
Strand=Plus/Plus
Query 114 atgaagagaaagagatacgagatggagaagaagaagaagacagagatTCAAACCGCCATT 173
||||||||||||||||||||||| | | ||||||||||||||||| |||||||||| |||
Sbjct 1 ATGAAGAGAAAGAGATACGAGAT-G-G-AGAAGAAGAAGACAGAGCTTCAAACCGCTATT 57
Query 174 GAAGAGCTCTCTGTTTTCATCGTAACTAAACCTGCAGATAAGACTGAGGCTACACATATA 233
|||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 58 GAAGAGCTCTCTCTTTTCATCGTAACTAAACCTGCAGATAACACTCAAGCTACACATATA 117
Query 234 CCCTTGAGGCCTATTCTCTCCTTCTGCAGCTTAATCATCCAAGTTCTTGATAAGATAGGA 293
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 CCCTTGAGGCCTCTTCTCTCCTTCTGCAACTTAATCATCCAAGTTCTTGATAAGATAGGA 177
Query 294 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAATTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAAGTT 237
Query 354 TATGAAACAGATTCCTGTGTTTACTCGAATTTGGCTGAGATTCTGAAGAAAGAAAAGGAG 413
| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 238 TGTGAAACAGATTCGTGTGTTTACTCCAATTTGGTTGAGATTCTGAAGAAAGAAAAGGAG 297
Query 414 GAGGGAACATCCAAGATGGTTGCTAGTTGTGGTAGAGCTCTTTTTTGGCTCACTAGGACA 473
|| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 298 GAAGGAACATCCAAGATGGTTGCTAGTTGCAGTAGAGCTCTATTTTGGCTCACTAGGACA 357
Query 474 ATGGATTTTACTGCGGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 533
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGATTTTACTTCTGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 417
Query 534 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 477
Query 594 GCTGCTTTCAAAGTGTGTTTGAAGCTGGTGCCTGACAACAAGACGTTCATGGAAGCGATC 653
|||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 478 GCTGCTTTCAAAGTTTGTCTGAGGCTAGTGCCTGACAACAAGACGTTCATGGACGCGATC 537
Query 654 GGTGCAAGAGACGAGAGCTATGATACCTTAAGAGAAGACATTGATACCTTGAGCTCATTG 713
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 538 GGTGCAAGAGACGAGAGTTATGATACCTTAAGAGAAGACATCGATACCTTAAGCTCATTG 597
Query 714 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAACAATACGGGTTGAGCAGATTA 773
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAGCAATACGGGTTGAGCAGATTA 657
Query 774 AGATCGATGTAG 785
||||||||||||
Sbjct 658 AGATCGATGTAG 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5