BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21370.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472372 jgi|Araly1|472372|fgenesh2_kg.1__2326__AT1G21370.2 1788 0.0
> Ahg472372 jgi|Araly1|472372|fgenesh2_kg.1__2326__AT1G21370.2
Length=1457
Score = 1788 bits (968), Expect = 0.0
Identities = 1097/1160 (95%), Gaps = 6/1160 (1%)
Strand=Plus/Plus
Query 298 CTCTCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGCTCTCAAGCTCTGGAT 357
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 194 CTCCCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGGTCTCGAGCTCTGGAT 253
Query 358 TTGATTGTATCATGAAAAGTTATCCAATTGGATCGAGTAAGGCATTTCATGCGTACTCAA 417
|||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 254 TTGATTGTATCATGAAAAACTATTCATTTGGATCGAGTAAGGCATTTCATGCGTACTCAA 313
Query 418 GAAGCGGTGATTTCGATTTAGAATCAGGAGGAACTATCAGAAAATCTAGAAAGCCTAAGA 477
|||| ||||||||||||||||||| | ||||||||||||||||||||||| || ||||
Sbjct 314 GAAGTAGTGATTTCGATTTAGAATC--G-GGAACTATCAGAAAATCTAGAAAACCAAAGA 370
Query 478 CTTCGTTTTCGAAGATGATCAAATCTCTTGGGAATCGTCTTCACCACATGTTCAAATTGC 537
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 371 ATTCGTTTTCGAAAATGATCAAATCTCTCGGGAATCGTCTTCACCACTTGTTCAAATTGC 430
Query 538 ACCCGGTTCTCGTTTTCGTCGTTTGTGTCTCGTTTGGTATCACAGTTCTGATACTTGTAT 597
||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| |||
Sbjct 431 ACCCGATTCTCGTTTTCATCTTTTGCCTCTCGTTTGGTATCACAGTTCTGATACTTTTAT 490
Query 598 CGTCGATTTACGGGAACCGTTTAGGATCAACGGTTAGTTATTATAAGAAGAATGATTTGG 657
|||||||||||| ||||| ||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 491 CGTCGATTTACGAGAACCATTTTGGATCAACGGTTACTTATTATAAGAAGAAAGATTTGG 550
Query 658 ATAGCGATGGTTATCCATTTGCTAATCTGAAGAACCTTGTGATGGTTGCTGGACATTCTG 717
||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 551 ATAACGATGGTTATCCATTTGCCAATCTGAAAAACCTTGTGATGGTTGCTGGACACTCTG 610
Query 718 TTTATACGAGTAGTGATTGTGGTAAAGTTGAGAAGGAGGATTCGTGGTTCTTGGAGTCTT 777
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 611 TTTATACGAGTAGTGATTGCGGTAAAGTTGATAAGGAGGATTCGTGGTTCTTGGAGTCTT 670
Query 778 ATCAGAAGAATCCAGGTCAAGCTGCAACGTTCTTGAGTCATATACAAGAAGGTGTTGAAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATCAGAAGAATCCAGGTCAAGCTGCAACGTTCTTGAGTCATATACAAGAAGGTGTTGAAG 730
Query 838 CAGCAGCGAAAGATGATGAGTCTTTGCTTCTATTCAGTGGTGGAGAGACTCGTAAGGACG 897
| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 731 CTGCAGGGAAAGATGATGAGTCTTTGCTTCTATTCAGTGGTGGACAGACTCGTAAAGATG 790
Query 898 CAGGACCTCGTAGTGAAGCTCAGAGTTATTGGGCTGTTGCTGAGTCAAAAGGATGGTTTG 957
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 791 CAGGACCTCGTAGTGAAGCTCAGAGTTATTGGGCTGTTGCTGAGTCTAAAGGATGGTTCG 850
Query 958 GTAAGAATGAGGTGAGGTCTAGGGCCTTGACGGAAGAGCATGCCAGAGACAGCTTTGAGA 1017
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 851 GTAAGGATGAGGTGAGGTCGAGGGCATTGACGGAAGAGCATGCCAGAGACAGCTTTGAGA 910
Query 1018 ATCTTCTCTTTAGCGTTTGTCGATTCAGAGAGCTCACAGGCTCTTACCCACAGAACATAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATCTTCTCTTTAGCGTTTGTCGATTCAGAGAGCTCACAGGCTCTTACCCACAGAACATAA 970
Query 1078 CAGTAGTGAGTTATGATTTTAAGGAGGAGAGATTTGCGCATTTGCATCGTTCAGCAATGG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAGTAGTGAGTTATGATTTTAAGGAGGAGAGATTTGCGCATTTGCATCGTTCAGCAATGG 1030
Query 1138 GATTTCCGGAATCAAGATTTTTCTACTTAGGAACACCAGCTTCTCTATCATCCAAAGAAG 1197
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1031 GATTTCCGGAATCAAGATTCTTCTACTTAGGAACCCCAGCTTCTCTTTCATCCAAAGAAG 1090
Query 1198 GCGCTCTAAAAGGCGAGGCTTTGGTTAGATCACAATTTCAAGAAGATCCATACGGATGTG 1257
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1091 GCGCTCTAAAAGGCGAGGCTATGGTTAGATCTCAGTTTCAAGAAGATCCATACGGATGTG 1150
Query 1258 TTGGTTCGCTTTGGCGTAAGAAGCTGAATCGTGACCCTTTCCATAGGACTATACCTTACC 1317
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1151 TTGGTTCGCTTTGGCGTAAGAAGCTGAAGCGTGACCCTTTCCACAGGACTATACCTTACC 1210
Query 1318 CTATTGGTTGCCCTGAAATTGGAGGATTGTTCAGGTACTGTGGTTCAGCTCCTTTTCCTG 1377
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CTAATGGTTGCCCTGAAATTGGAGGATTGTTCAGGTACTGTGGTTCAGCTCCTTTTCCTG 1270
Query 1378 GCTCTCTCCCATGGGGCTAATCTGTATAAGATCTATACTTAAAGAGGAATCAATACTTGA 1437
||||||||||||||| || |||||| |||||||| |||| | |||||| ||||||||||
Sbjct 1271 GCTCTCTCCCATGGGACTGATCTGTGTAAGATCTGTACT-A--GAGGAACCAATACTTGA 1327
Query 1438 TCAAAGAGCTTGTTGGTAGA 1457
||||||||||| ||||||||
Sbjct 1328 TCAAAGAGCTTATTGGTAGA 1347
Score = 148 bits (80), Expect = 9e-35
Identities = 89/93 (96%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 1520 TTTGTATTCTGCTTTCATGTGTTGTCGAAAAACCGAGAATTTTACTTGTATCAAATGCAA 1579
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1366 TTTGTATTCTCCTTTCATGTGTTGTC-AAAAACCTAGAATTTTACTTGTATCAAATGCAA 1424
Query 1580 TTTACGTAAAATAAAATTTTGACATTTCTATCC 1612
||||| |||||||||||||||||||||||||||
Sbjct 1425 TTTACCTAAAATAAAATTTTGACATTTCTATCC 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5