BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21380.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472374 jgi|Araly1|472374|fgenesh2_kg.1__2328__AT1G21380.1 3046 0.0
Ahg476856 jgi|Araly1|476856|fgenesh2_kg.2__1986__AT1G76970.1 811 0.0
> Ahg472374 jgi|Araly1|472374|fgenesh2_kg.1__2328__AT1G21380.1
Length=1922
Score = 3046 bits (1649), Expect = 0.0
Identities = 1846/1937 (95%), Gaps = 29/1937 (1%)
Strand=Plus/Plus
Query 30 ACAAAGAAGTCGCAGTTGATTTTATGGACGGCTAAGGCTGATGATGACCTGACACAAAAC 89
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ACAAAGAAGTCGCAGTTGA-TTTATGGGCGGCTAAGGCTGATGATGACCTGACACAAAAC 59
Query 90 TCCGATCGTGTTCGATTACAAGTTTAGATTTTTCTGAGAACCCTTATAATTGTTTCAACT 149
||||||||||||||| ||||||||||||||||||| | ||||||| ||||| |||||| |
Sbjct 60 TCCGATCGTGTTCGAATACAAGTTTAGATTTTTCTTACAACCCTTTTAATTATTTCAA-T 118
Query 150 -TT-TGGATCTTCACACGCATAAATTTTCGCTTCGTCTTTCATCATCTGTTCTCAAGTTT 207
|| | |||||| | |||||||||| || |||||||| | |||||||||||||||||||
Sbjct 119 ATTCTCGATCTTGATACGCATAAATCTTAGCTTCGTC--T-ATCATCTGTTCTCAAGTTT 175
Query 208 AGAGTCTATA-GT-CA-GGAAACTTGGAACTTTAGGATTTGATTGAAAAAGCAATCTTGC 264
||| |||| | | ||||| ||||| ||||||| ||||||||||||||| |||||||
Sbjct 176 --AGTTTATACTTATAGGGAAA-TTGGAGCTTTAGGGTTTGATTGAAAAAGCGATCTTGC 232
Query 265 GATGGCGAATAATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCC 324
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 233 GATGGCGAATAATGCGGCTGCTTGTGCTGAGAGGGCTACAAATGATATGCTGATTGGTCC 292
Query 325 AGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGTCAAGCAAA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGTCAAGCAAA 352
Query 385 AGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCT 412
Query 445 TGCTCTTTATGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCAT 504
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 413 TGCTCTTTATGCTTTGGAAACTCTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCAT 472
Query 505 TGTTGACCGAGATATTTTACCTGATATGGTCAAAATAGTGAAGAAGAAGCCAGACCTGAC 564
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 473 TGTTGACCGTGATATTTTACCTGATATGGTCAAAATAGTGAAGAAAAAGCCTGACCTGAC 532
Query 565 TGTGAGGGAGAAGATACTTAGTTTATTAGATACATGGCAAGAAGCTTTTGGTGGAAGCGG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGTGAGGGAGAAGATACTTAGTTTATTAGATACATGGCAAGAAGCTTTTGGTGGAAGCGG 592
Query 625 CGGAAGATTCCCTCAGTACTACAATGCCTATAATGAACTCAGGTCTGCTGGAATTGAATT 684
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 CGGAAGATTCCCTCAGTACTACAATGCTTATAATGAACTCAGGTCTGCTGGAATTGAATT 652
Query 685 CCCACCTCGAACCGAGAGCAGTGTACCGTTCTTTACTCCACCTCAGACTCAGCCTATTGT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCCACCTCGAACCGAGAGCAGTGTACCGTTCTTTACTCCACCTCAGACTCAGCCTATTGT 712
Query 745 TGCTCAGGCAACTGCATCAGATGAAGATGCTGCTATTCAGGCCTCTCTGCAAAGTGATGA 804
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 713 TGCTCAGGCCGTTGCATCAGATGAAGATGCTGCTATTCAGGCCTCTTTGCAAAGTGATGA 772
Query 805 TGCTTCTGCACTCAGCATGGAAGAGATTCAAAGCGCTCAGGGATCAGTTGATGTTTTGAC 864
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 773 TGCTTCTGCACTCAGCATGGAAGAGATTCAAAGCGCTCAGGGATCGGTTGATGTTTTGAC 832
Query 865 AGACATGCTTGGGGCTCTTGATCCAAGTCATCCAGAGGGTTTGAAGGAAGAACTTATAGT 924
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 833 AGACATGCTTGGGGCTCTTGATCCAAGCCATCCAGAGGGTTTAAAGGAAGAACTTATAGT 892
Query 925 TGACTTGGTCGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTG-TGAATACTA 983
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 893 TGACTTGGTCGAGCAATGTCGTACTTATCAAAGACGTGTAATGACT-TTGGTGAATACTA 951
Query 984 CTTCAGATGAGGAACTTATGTGTCAAGGGTTGGCACTGAATGACAATCTGCAGCGCGTTC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTTCAGATGAGGAACTTATGTGTCAAGGGTTGGCACTGAATGACAATCTGCAGCGCGTTC 1011
Query 1044 TTCAGCACCATGATGATAAGGCAAAGGGAAACTCTGTTCCTGCAACAGCTCCCACTCCAA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTCAGCACCATGATGATAAGGCAAAGGGAAACTCTGTTCCTGCAACAGCTCCCACTCCAA 1071
Query 1104 TACCGCTTGTTAGCATCAATCatgatgacgatgatgatgagtcagatgatgatTTTT-TA 1162
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1072 TACCGCTTGTTAGCATCAATCATGATGATGATGATGATGAGTCAGATGATGATTTTTCT- 1130
Query 1163 CAGCTAGCTCATAGGTCGAAAAGAGAAAGTGCACGAGGGACTGGACAAGGGAATTTCAAC 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CAGCTAGCTCATAGGTCGAAAAGAGAAAGTGCACGAGGGACTGGACAAGGGAATTTCAAC 1190
Query 1223 CCTATTCTTCCTCCTCCACCATCTTCAATGAGGCCAGTACATGTTGATTCTGGTGCTATG 1282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 CCTATTCTTCCTCCTCCACCATCTACAATGAGGCCAGTACATGTTGATTCTGGTGCTATG 1250
Query 1283 GACTTCCTCAGTGGTGATGTCTACAAACCTCAAGAAACCTTCGAGAATGTAAAGCCTCCG 1342
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1251 GACTTCCTCAGTGGTGATGTCTACAAACCTCAAGAAACCTTCAAGAGTGTAAAGCCTCCG 1310
Query 1343 AGTACATCCCAATCATCAAACCATGACTATTCTGCTCCTATTTTCGATGAACCAGTTCCT 1402
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1311 AGTACATCCCAATCATCAAACCATGACTATTCCGCTCCTATTTTCGATGAACCAGTTCCC 1370
Query 1403 CAGAGCAAATCCCCTGAGCATGCTTTATTCACCAAACCAGTCTATGACCAAACTGAACAA 1462
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1371 CAGAGCAAATCCCCTGAGCAAGCTTTATTCACCAAACCAGTTTATGACCAAACTGAACAA 1430
Query 1463 TTGCCTCCTGCTCCATGGGAGACTCAGGAGCCCCGGAAGTATCCACCCTCAATGTCTGCT 1522
|||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1431 TTGCCTCCTGCTCCATGGGATACTCAGGAACCCAGGAAGTATCCACCCTCAATGTCTGCT 1490
Query 1523 AGAACCAACAAGAGGCCAGAATACTTCCAGCATAATGTTCCACAACACTCAAGCAGTGCC 1582
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 1491 AGAACCAACAAGAGACCAGAATACTTCCAGCATAGTGTTCCCCAACACTCAAGCAGTGGC 1550
Query 1583 TCTGAATCTTCATACGATGATCTTTTGGGACAATCCCGGAATCTCTCTCTTAATCCAACA 1642
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 1551 TCTGAATCTTCATACGATGATCTTGTGGGACAATCTCGGAATCTCTCTCTGAATCCAACA 1610
Query 1643 GCCTCTGCTGCTCCTGTTACTCCACCAAAGAAAGATGATAAACCAGAGGATATCCTTTTT 1702
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GCCTCTGCTGCTGCTGTCACACCACCAAAGAAAGATGATAAACCAGAGGATATCCTTTTC 1670
Query 1703 AAAGACCTGATGGATTTTGCAAAAACCAGGACATCATCATCTTCTTCCTCCAAACCCAAC 1762
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AAAGACCTGATGGAGTTTGCAAAAACCAGGACATCATCATCTTCTTCCTCCAAACCCAAC 1730
Query 1763 AATCAGAACAACAAACCGTTTTGAGACAGAGCTGGCAGTTGTTACTTCAGTAAACAACTA 1822
|| |||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct 1731 AACCAGAACAACAAACCGTTTTGAGACAGAGCTAGCAGTTGTTGCTTTAGTAA-CAACTA 1789
Query 1823 CTCTTTTACTATTCTTTTTTCTTTC---ACTTGTGTACTTGTTTCCTTTGACTGAACATG 1879
|||||| ||||||||||||| |||| |||||||| | ||||||||||| ||||||||
Sbjct 1790 CTCTTT-ACTATTCTTTTTTTTTTCTTCACTTGTGT--T-GTTTCCTTTGATTGAACATG 1845
Query 1880 GAtttttttACCAAATaaaaaaaaTAGTGAATA----GAGATCTGTTATTGGATAGAAAT 1935
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1846 GATTTTTTTATCAAATAAAAAAAATAGTGAATATTTAGAGATCTGTTATTGGATAGAAAT 1905
Query 1936 GTCAAAATTTTATTTTA 1952
|||||||||||||||||
Sbjct 1906 GTCAAAATTTTATTTTA 1922
> Ahg476856 jgi|Araly1|476856|fgenesh2_kg.2__1986__AT1G76970.1
Length=1687
Score = 811 bits (439), Expect = 0.0
Identities = 737/876 (84%), Gaps = 39/876 (4%)
Strand=Plus/Plus
Query 221 AGGAAACTTGG-AACTT-TAGGATTTGATTGAAAAAGCA-ATCTTGCGATGGCGAATAAT 277
|||||| |||| ||||| | ||||||||||| | ||| | | || |||||| ||| |
Sbjct 160 AGGAAATTTGGAAACTTGTGGGATTTGATTG-ATAAG-AGTTGTTAAGATGGCAAATGAC 217
Query 278 GCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATC 337
|||||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 218 GCGGCTGCGTGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATT 277
Query 338 AACATTGAACTGTGTGACATTATCAACATGGAACCAAGTCAAGCAAAAGAAGCAGTGAAG 397
||||||||| ||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 278 AACATTGAATTGTGTGATATTATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAA 337
Query 398 GTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATGCT 457
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 338 GTGCTCAAGAAGCGGTTAGGAAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCA 397
Query 458 TTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT-GTTGACCGAGA 516
||||||||||| ||||||||||||||||| | ||||||||||| || ||||||| ||
Sbjct 398 TTGGAAACTTTAAGTAAGAATTGTGGCGAAAACGTGTACCAGCT-TTTCATTGACCGTGA 456
Query 517 TATTTTACCT-GATATGGTCAAAATAGTGAAGAAGAAGCCAGACCTGACTGTGAGGGAGA 575
|||||| | || ||||||||| |||||||||| ||||| ||||||| ||||||||| |
Sbjct 457 TATTTT-GATAGACATGGTCAAACTAGTGAAGAAAAAGCCGGACCTGAATGTGAGGGAAA 515
Query 576 AGATACTTAGTTTATTAGATACATGGCAAGAAGCTTTTGGTGGAAGCGGCGGAAGATTCC 635
||||||| ||||| ||||| |||||||||||||||||||||||| | || || ||| ||
Sbjct 516 AGATACTAAGTTTGTTAGACACATGGCAAGAAGCTTTTGGTGGACGTGGAGGTCGATACC 575
Query 636 CTCAGTACTACAATGCCTATAATGAACTCAGGTCTGCTGGAATTGAATTCCCACCTCGAA 695
| || ||||||||||||||||| || |||||||||||||||||||| || ||||||||||
Sbjct 576 CACAATACTACAATGCCTATAACGATCTCAGGTCTGCTGGAATTGAGTTTCCACCTCGAA 635
Query 696 CCGAGAGCAGTGTACCGTTCTTTACTCCACCTCAGACTCAGCCTATTGTTGCTCAGGCAA 755
| || |||||| || |||||||||||||| | | | ||| | || | |
Sbjct 636 CGGAAAGCAGTCTATCGTTCTTTACTCCA-C-C-G---CAG---A------CT----C-A 675
Query 756 CTGCATCAGATGAAGATGCTGCTATTCAGGCCTC-TCTGCAAAGTGATGATGCTTCT-GC 813
|| ||||||| ||||||||||||||||| || | ||||| | |||| ||||||| ||
Sbjct 676 --GC--CAGATGATGATGCTGCTATTCAGGCGTCGT-TGCAAGGAGATGTTGCTTCTAGC 730
Query 814 ACTCAGCATGGAAGAGATTCAAAGCGCTCAGGGATCAGTTGATGTTTTGACAGACATGCT 873
|||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 731 -CTCAGCTTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTTTTGATAGACATGCT 789
Query 874 TGGGGCTCTTGATCCAAGTCATCCAGAGGGTTTGAAGGAAGAACTTATAGTTGACTTGGT 933
||| || |||||||| | |||| ||| |||| || |||||| ||||||||||||| ||
Sbjct 790 TGGAGCACTTGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTTATAGTTGACTTAGT 849
Query 934 CGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTGTGAATACTACTTCAGATGA 993
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 850 TGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAACACTACAACAGATGA 909
Query 994 GGAACTTATGTGTCAAGGG-TTGGCACTGAATGACAATCTGCAGCGCGTTCTTCAGCACC 1052
||||||| ||||||| ||| |||||| | ||||| ||| ||||||| |||||||||| |
Sbjct 910 GGAACTTCTGTGTCA-GGGATTGGCATTAAATGATAATTTGCAGCGTGTTCTTCAGCGTC 968
Query 1053 ATGATGATAAGGCAAAGGGAAACTCTGTTCCTGCAA 1088
| ||||||| ||||||| | |||||||||| |||
Sbjct 969 ACGATGATATCGCAAAGGTCAGCTCTGTTCCTTCAA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5