BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21390.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472375 jgi|Araly1|472375|fgenesh2_kg.1__2329__AT1G21390.1 1502 0.0
> Ahg472375 jgi|Araly1|472375|fgenesh2_kg.1__2329__AT1G21390.1
Length=1064
Score = 1502 bits (813), Expect = 0.0
Identities = 1007/1095 (92%), Gaps = 35/1095 (3%)
Strand=Plus/Plus
Query 69 ATAGAACGGGTCAAGCAAGATATCTTTTTTGTTTGTTTCCCTTGTTAATCG-TTATAAAC 127
|||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1 ATAGAACGGGTCTAGCAAGATTTCTTTTTTGTTTGTTTCCCTTGTTAATTGTTTATAAAC 60
Query 128 TTGTTTCTCAATAAAACTTGAGTTTTTAAAAA-TCCAGTCTTGCAAATTCATCGACG-AT 185
||||||||||| |||||| |||||||||||| |||||||||||||| ||||| | | ||
Sbjct 61 TTGTTTCTCAACAAAACTCAAGTTTTTAAAAACTCCAGTCTTGCAAAATCATC-A-GAAT 118
Query 186 GTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGTGTTTTCCGAGTATTCCCAA 245
||||||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 119 GTTAGAT-C--CTTCAGCTAAATCCTTCAATACCCATTTGTGTTTTCCAAGTATTCCGAA 175
Query 246 TGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCCCCGAA 305
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 176 TGATGATCACTCAGATTCCGGCGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCGCCGGA 235
Query 306 GAGTCCTCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCGCCGGATTCTAAAGC 365
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 236 GAG---TCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCACCGGATTCTAAAGC 292
Query 366 ACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTC 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ACAAGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTC 352
Query 426 GTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAATGAACG 485
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 353 GTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTGAAGGTAAATCAAGAGAATGAACG 412
Query 486 GAAGGTGTTCGATGAATTGCCTAAGAGAGCAAATAGGCAGAGTAAAGTTGTGAGGAAGAC 545
|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 413 GAAGGTGTTCGATGAATTGCCTAAGAGAACAATTAGGCCGAGTAAAGTTGTGAGGAAGAC 472
Query 546 GAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCT 605
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAAGAGTGATAAACGGATTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCT 532
Query 606 TCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAGGATACGACTaagaagaagaa 665
||||||||| ||||||| ||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 533 TCTCAAAATGATGTTTCCGGTTAGTTTAGGAACTAAGAAAGATACGACTAAGAAGAAGAA 592
Query 666 gaagaagaaAAAGGATGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCTGAGGAGAC 725
||| || | ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 GAA-AA-A----GGAGGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCCGAGGAGAC 646
Query 726 TGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCGAGCACAAAGAGGAG 785
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 647 TGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCAAGCACAAAGAGGAG 706
Query 786 TGGTAGTAGCAGTAGCAACAACAGTATTAGGAGCCGAAGCAGCTTAAGGGATGAAAAAAG 845
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 707 TGGTAGTAGCAGTAGCAACAACAGTAATAGGAGCCGAAGTAGCCTAAGGGATGAAAAAAG 766
Query 846 TAGCTGCTTCTCTTTTCTTACATTCAAGAAACTAATTCCTCAGTATCTGAAACAAAGATT 905
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||
Sbjct 767 TAGCTGCTTCTCTTTTCTTACGTTCAAGAGACTAATTCCTCAATATCTGAAACAAAGCTT 826
Query 906 TATTGGCTTAAGAAGCAGAGCTTGATAAACGCATACACTCGAGTCAGTGTTT-GCAGTCT 964
| ||||||||||||||||||||||||| |||| ||||||||||| | |||| |||||||
Sbjct 827 TCTTGGCTTAAGAAGCAGAGCTTGATATCCGCA-ACACTCGAGTCTGCGTTTTGCAGTCT 885
Query 965 AATCTTCAGGAGGAACAGCTCAGAGAACGGACACAAAGATGATCACTTTTCCGATAAATT 1024
||||||| | ||||||||||| |||||| ||||| ||||||||||||||||||||||| |
Sbjct 886 AATCTTCTG-AGGAACAGCTCTGAGAACAGACACGAAGATGATCACTTTTCCGATAAACT 944
Query 1025 TTTGCTTCTGCAAAAGCCTAAGTATCCTTTTGGATATGGTTTTAAGTTATGTAAATAGAG 1084
||||||||||||| ||| || |||||||||||||||||||||||| || |||||||||||
Sbjct 945 TTTGCTTCTGCAATAGCTTATGTATCCTTTTGGATATGGTTTTAAATTCTGTAAATAGAG 1004
Query 1085 ATTAATGTGCAGTTGTGCACTGATTAGTCTCTCACAACTCTTGGATTTTGAATTCTAATG 1144
| | | | | | ||||| || |||||| || ||||||||||||||||||||||
Sbjct 1005 AG-A-T-TA-A-T-GTGCA---AT----CTCTCA-AA-TCTTGGATTTTGAATTCTAATG 1049
Query 1145 TACAGTGGTGTTTAG 1159
|||||||||||||||
Sbjct 1050 TACAGTGGTGTTTAG 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5