BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21395.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value Ahg472376 jgi|Araly1|472376|fgenesh2_kg.1__2330__AT1G21395.1 302 2e-81 > Ahg472376 jgi|Araly1|472376|fgenesh2_kg.1__2330__AT1G21395.1 Length=225 Score = 302 bits (163), Expect = 2e-81 Identities = 210/230 (91%), Gaps = 13/230 (6%) Strand=Plus/Plus Query 47 ATGAGGATGAAGAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTATTT 106 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGAGGAT---GAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTAATT 57 Query 107 ACGATGGGAGGCGAAGCAAAGTCGGACAAAGAGTGCCAAGTGTTGTGCCATAAGCACTGT 166 ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 58 ACGATGGGAGGTGATGCAAAGTCGGACAAAGAGTGCCAATTGTTGTGCCATAAGCACTGT 117 Query 167 CTACCCACTTCCTTTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGCGGGAGGACTCCA 226 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 118 CTACCCACTTCCATTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGTGGGAGGACTCCA 177 Query 227 -CCGGTTGCAGTTGGA-----A-CCATG-AATTCTGGTGAACACAAATAA 268 ||| ||||||||||| | ||||| ||| |||| |||||||||||| Sbjct 178 GCCG-TTGCAGTTGGACTTGGAACCATGGAAT-CTGGCGAACACAAATAA 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13392611739 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5