BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21395.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472376 jgi|Araly1|472376|fgenesh2_kg.1__2330__AT1G21395.1         302    2e-81


> Ahg472376 jgi|Araly1|472376|fgenesh2_kg.1__2330__AT1G21395.1
Length=225

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 210/230 (91%), Gaps = 13/230 (6%)
 Strand=Plus/Plus

Query  47   ATGAGGATGAAGAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTATTT  106
            ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGAGGAT---GAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTAATT  57

Query  107  ACGATGGGAGGCGAAGCAAAGTCGGACAAAGAGTGCCAAGTGTTGTGCCATAAGCACTGT  166
            ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  58   ACGATGGGAGGTGATGCAAAGTCGGACAAAGAGTGCCAATTGTTGTGCCATAAGCACTGT  117

Query  167  CTACCCACTTCCTTTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGCGGGAGGACTCCA  226
            |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  118  CTACCCACTTCCATTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGTGGGAGGACTCCA  177

Query  227  -CCGGTTGCAGTTGGA-----A-CCATG-AATTCTGGTGAACACAAATAA  268
             ||| |||||||||||     | ||||| ||| |||| ||||||||||||
Sbjct  178  GCCG-TTGCAGTTGGACTTGGAACCATGGAAT-CTGGCGAACACAAATAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5