BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21400.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313033 jgi|Araly1|313033|fgenesh1_pm.C_scaffold_1001813 2172 0.0
> Ahg313033 jgi|Araly1|313033|fgenesh1_pm.C_scaffold_1001813
Length=1419
Score = 2172 bits (1176), Expect = 0.0
Identities = 1342/1423 (94%), Gaps = 8/1423 (1%)
Strand=Plus/Plus
Query 67 ATGGCGATCTGGTTTGCTAGATCCAAAACCCTTGTTTCTAGCTTGAGACATAATCTAAAT 126
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGATCTGGTTTGCTAGATCCAAAAACCTTGTTTCTAGCTTGAGACATAATCTGAAT 60
Query 127 TTGTCGACAATTCTCATA-AAACGTGATTACTCTCATCGTCCCATCTTC-TAT--ACAAC 182
|||||| | ||||||| | ||| | ||||||| || |||||| |||||| | | |||||
Sbjct 61 TTGTCGGCGATTCTCA-ACAAATGCGATTACTTTCCTCGTCCGATCTTCTTTTCAACAAC 119
Query 183 TTCTCAGTTATCTTCAACGGCGTATTTGAGTCCCTTCGGTAGCCTCCGTCATGAGTCTAC 242
||||||||||||||| ||| ||| |||||||||| ||| |||||||||||||||||||||
Sbjct 120 TTCTCAGTTATCTTCCACGTCGTTTTTGAGTCCCGTCGCTAGCCTCCGTCATGAGTCTAC 179
Query 243 GGCCGTGGAGACACAGGCTGATCATTTGGTTCAGCAGATTGATGAAGTCGATGCCCAGGA 302
||| |||||||||||| |||||||||||||| ||||||||||||| ||||| |||||
Sbjct 180 GGCTGTGGAGACACAGCCTGATCATTTGGTT---CAGATTGATGAAGACGATGGTCAGGA 236
Query 303 ACTGGATTTCCCAGGAGGCAAAGTCGGTTACACATCGGAGATGAAATTCATACCGGAATC 362
| ||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 237 ATTGGATTTTCCGGGAGGCAAAGTCGGTTACACATCTGAAATGAAATTCATACCGGAATC 296
Query 363 ATCTTCAAGGAGGATTCCATGTTACCGGGTTCTTGACGAAGACGGACGAATCATCCCCGA 422
|||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 ATCTTCTCGGAGAATTCCGTGTTACCGGGTTCTTGACGAAGACGGACGAATTATCCCCGA 356
Query 423 TAGCGATTTTATTCCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAGCGATTTTATACCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 416
Query 483 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATATCTTTTTA 542
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 417 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATCTCGTTTTA 476
Query 543 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCAGCAGCTGCTCTCAGTCCTGA 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCTGCAGCTGCTCTCAGTCCTGA 536
Query 603 CGACGTCGTTTTACCTCAGTACCGAGAACCTGGAGTTCTTTTGTGGCGTGGCTTCACGTT 662
||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||||||
Sbjct 537 CGATGTCGTTTTACCTCAATACCGAGAGCCTGGAGTTCTTCTATGGCGTGGCTTCACGTT 596
Query 663 GGAGGAGTTTGCTAATCAGTGTTTTGGGAACAAAGCTGATTATGGCAAAGGCAGACAAAT 722
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 GGAGGAGTTTGCTAATCAGTGTTTTGGGAATAAAGCTGATTATGGCAAAGGCAGACAAAT 656
Query 723 GCCAATTCATTACGGTTCCAATCGTCTTAATTACTTCACTATCTCCTCTCCAATTGCCAC 782
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 GCCGATTCATTACGGTTCCAATCGTCTCAATTACTTCACTATCTCCTCTCCAATTGCCAC 716
Query 783 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTTTGAAAATGGACAAGAAGAATGCTTG 842
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 717 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTCTGAAAATGGACAAGAAGAACGCTTG 776
Query 843 TACTGTTACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTTCACGCCGGATTGAA 902
| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TGCAGTAACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTCCACGCCGGATTGAA 836
Query 903 TTTTGCGGCCGTAATGGAAGCTCCGGTTGTGTTTATATGTCGGAACAACGGTTGGGCGAT 962
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 837 TTTTGCGGCAGTAATGGAAGCTCCGGTCGTGTTTATCTGTCGGAACAACGGTTGGGCGAT 896
Query 963 TAGTACTCATATCTCAGAACAGTTTAGAAGTGATGGAATAGTTGTGAAAGGTCAAGCTTA 1022
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 897 TAGTACTCATATCTCAGAACAGTTCAGAAGTGATGGAATTGTTGTGAAAGGTCAAGCTTA 956
Query 1023 CGGTATCCGAAGCATCCGTGTGGACGGTAACGATGCACTTGCGGTTTATAGTGCTGTACG 1082
|| ||||||||||| |||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct 957 TGGAATCCGAAGCATTCGTGTGGACGGTAATGATGCACTCGCGGTTTATACTGCGGTACG 1016
Query 1083 CTCAGCTCGAGAAATGGCTGTAACAGAACAAAGACCTGTTCTCATTGAGATGATGACATA 1142
||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1017 CTCGGCTCGAGAAATGGCTGTAACAGAACAAAGACCAGTTCTCATTGAGGCGATGACATA 1076
Query 1143 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1136
Query 1203 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTTCGGAAATGGGTCGAAGATAA 1262
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1137 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTCCGGAAATGGGTCGAGGATAA 1196
Query 1263 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAACGCAAGAAAACAGCTTCT 1322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAAGGCAAGAAAACAGCTTCT 1256
Query 1323 GCAAGCGATTCAGGCTGCGGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1382
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCAAGCGATTCAGGCGGCAGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1316
Query 1383 TGTATATGATGTTAAACCGAAGAACCTAGAAGAGCAAGAACTTGGTTTGAAGGAATTAGT 1442
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1317 TGTATATGATGTTAAACCGAAGAATCTAGAAGAGCAAGAACTTGGTTTAAAGGAATTAGT 1376
Query 1443 AAAGAAACAACCTCAAGATTATCCTCCTGGCTTTCATGTTTGA 1485
| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 AGAGAAACAACCTCAAGATTATCCTCCTGGTTTTCATGTTTGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5