BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21410.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472378 jgi|Araly1|472378|fgenesh2_kg.1__2332__AT1G21410.1 2102 0.0
Ahg476863 jgi|Araly1|476863|fgenesh2_kg.2__1993__AT1G77000.1 977 0.0
> Ahg472378 jgi|Araly1|472378|fgenesh2_kg.1__2332__AT1G21410.1
Length=1318
Score = 2102 bits (1138), Expect = 0.0
Identities = 1261/1320 (96%), Gaps = 9/1320 (1%)
Strand=Plus/Plus
Query 95 GATCAAGTTCACCGCTTCATTTTAGTCATTAAACAAAGATGGTGATGGGAGGAGAAGCAT 154
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCAAGAACACCGCTTCATTTTAGTCATTAAACAAAGATGGTGATGGGAGGAGAAGCAT 60
Query 155 CCATGGAACTGGACCAGTGTTTTCAGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGT 214
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATGGAGCTGGACCATTGCTTTCAGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGT 120
Query 215 GGAAAGATATCCCTGTGGAGCTTCTGATGAGGATCCTTTCCCTTGTTGATGATCGTAATG 274
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGAGATATCCCTGTGGAGCTTCTGATGAGGATCCTTTCCCTTGTTGATGATCGTAATG 180
Query 275 TCATTGTTGCTTCTGGTGTTTGCACTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTC 334
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTGTTGCTTCTGGTGTTTGCTGTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTC 240
Query 335 GTCTCCGTCTATCTTGGTGCAACAACAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCA 394
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GTCTCCGTCTCTCTTGGTGCAACAGCAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCA 300
Query 395 AGTTTGTAAAGCTGCAGACTTTAAAT-CTAAGGCAGGACAAACCGCAACTAGAGGACAAT 453
||||||| |||||||||||||| ||| || ||||||||||||| ||||| |||||||||
Sbjct 301 AGTTTGTGAAGCTGCAGACTTT-AATACTGCGGCAGGACAAACCACAACTTGAGGACAAT 359
Query 454 GCAGTGGAGGCCATAGCAAATCACTGCCATGAGTTACAAGAACTTGATCTCAGCAAAAGC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAGTGGAGGCCATAGCAAATCACTGCCATGAGTTACAAGAACTTGATCTCAGCAAAAGC 419
Query 514 TTGAAAATTACAGACCGTTCACTTTATGCACTTGCTCATGGTTGCCCAGACCTCACAAAA 573
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 TTGAAAATTACAGATCGTTCACTTTATGCACTTGCTCATGGTTGCCCTGACCTCACAAAA 479
Query 574 CTCAACCTTAGTGGCTGCACTTCATTCAGCGACACTGCTATTGCGTATTTGACCAGATTC 633
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 CTCAACCTTAGTGGCTGCACTTCATTCAGTGACACTGCTATTGCGTATTTGACCAGATTC 539
Query 634 TGCAGAAAGCTTAAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCAGAAAGCTTAAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCC 599
Query 694 TTGGAGGC---TATTGGGAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGT 750
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGAGGTGAATATTGGGAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGT 659
Query 751 GAGAATATCAGTGATGATGGGGTAATGAGTTTAGCTTATGGCTGTCCAGATCTCAGGACC 810
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 GAGAATATCAGTGATGATGGGGTAATGAATTTAGCTTATGGCTGTCCAGATCTCAGGACC 719
Query 811 CTTGACCTCTGCGGCTGTGTTCTTATTACAGATGAGAGTGTGGTAGCTCTAGCAGACTGG 870
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 720 CTTGACCTCTGTGGCTGTGTTCTAATTACAGATGAGAGTGTGGTAGCTCTAGCGGATTGG 779
Query 871 TGTGTCCACTTGAGGTCACTGGGGCTATACTATTGCAGAAACATAACAGACAGAGCAATG 930
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 780 TGTGTCCACTTGAGGTCACTGGGGTTATACTATTGCAGAAACATAACAGACAGGGCAATG 839
Query 931 TACTCGCTAGCTCAAAGCGGGGTAAAGAACAAACCGGGATCGTGGAAATCGGTTAAGAAA 990
|||||| ||||||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct 840 TACTCGTTAGCTCAAAGCGGGGTAAAGAACAAACCGGGTTCATGGAAATCAGTAAAGAAA 899
Query 991 GGTAAATACGATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTTACA 1050
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 GGCAAATACGATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTCACA 959
Query 1051 CCTTCAGCGGTTCAAGCTGTTTGCGATTCATTTCCCGCACTTCACACATGCTCAGGAAGG 1110
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 960 CCTTCAGCGGTTCAAGCTGTTTGCGATTCCTTTCCCGCGCTTCACACATGTTCAGGAAGG 1019
Query 1111 CATTCGCTTGTCATGAGCGGCTGTCTGAACTTAACAACTGTGCACTGTGCTTGTATCCTT 1170
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 CATTCGCTTGTCATGAGCGGTTGTCTGAACTTAACAACTGTCCACTGTGCTTGTATCCTT 1079
Query 1171 CAGGCTCATCGTGCACACAATGCGGTTCCTCATCCTGCTCATT-AAGACAGAGGAATAGT 1229
|||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 1080 CAGGCTCATCGTGCGCACAATGCGGTTCCTCATCCGGCTCATTGAA-ACAGAGGAATAGA 1138
Query 1230 TATGTTGTATATATAAACATCATGTTGATGGAGATTAGTATTATAAACGAAGTAGCTTTT 1289
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TATGTTGTATATATAAGCATCATGTTGATGGAGATTAGTATTATAAACGAAGTAGCTTTT 1198
Query 1290 TTAAGGTTTATGTGAAACCTTAGAAGCTTTTGAGTTGTTCTTTCTTTGTCTTGAAAGATC 1349
| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 TGAAGGTGTATGTGAAACCTTAGAAGCTTTTGAGTTGTTCTTTCTTTGCCTTGAAAGATC 1258
Query 1350 TTTTGTATATTTTGGTGCTATGTTCATAACTTCTTTA--GTAAGACCTCTCGTTGTTACC 1407
|||||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||
Sbjct 1259 TTTTGTATATTTTGGTGCTATGTTTATGACTTTTTTTTTGTAAGACCTCTCTTTGTTACC 1318
> Ahg476863 jgi|Araly1|476863|fgenesh2_kg.2__1993__AT1G77000.1
Length=1329
Score = 977 bits (529), Expect = 0.0
Identities = 898/1075 (84%), Gaps = 30/1075 (3%)
Strand=Plus/Plus
Query 129 AAAGATGGTGATG-GGAGGAG-AAGCATCCATGGAACTGGACC-AGTGTTTTC-AGAAGA 184
||||||||||| | | ||||| || || | |||||| ||| | || ||| ||||||
Sbjct 137 AAAGATGGTGA-GTGAAGGAGCAA-CAAGAAAGGAACTTAACCTA-TG-CTTCGAGAAGA 192
Query 185 TGAAGATGGAAGGAATC-TCGATCAAAGAGTGGAAAGATATCCCTGTGGAGCTTCTGATG 243
||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| |||
Sbjct 193 TGAAGATGGAAAGAATCGT-GATCTCTGAGTGGAAAGATATCCCTGTGGAGCTTCTTATG 251
Query 244 AGGATCCTTTCCCTTGTTGATGATCGTAATGTCATTGTTGCTTCTGGTGTTTGCACTGGC 303
|||||||| ||||||||||||||| | || || |||||||| || |||| | |||
Sbjct 252 AGGATCCTAAACCTTGTTGATGATCGGACGGTGATCATTGCTTCTTGTATTTGTAGTGGT 311
Query 304 TGGAGAGATGCTATCTCTTTTGGCCTCACTCGTCTC-CGTCTATCTTGGTGCAACAACAA 362
|||||||||||||| || ||||||||||||||||| | || ||||||||||| || ||
Sbjct 312 TGGAGAGATGCTATTTCCCTTGGCCTCACTCGTCTCTC-CCTCTCTTGGTGCAAGAAGAA 370
Query 363 CATGAACAGCTTGGTTCTTTCTCTTGTTCCCAAGTTTGTAAAGCTGCAGACTTTAAAT-C 421
|||||||| |||||||||||||||| |||||| || |||||||| |||||||| | | |
Sbjct 371 TATGAACAGTTTGGTTCTTTCTCTTGCTCCCAAATTCGTAAAGCTTCAGACTTT-AGTAC 429
Query 422 TAAGGCAGGACAAACCGCAACTAGAGGACAATGCAGTGGAGGCCATAGCAAATCACTGCC 481
| | || ||||||||||| || ||||||| || ||||| ||||||||||||||||| |
Sbjct 430 TGCGACAAGACAAACCGCAGCTTGAGGACAGCGCGGTGGAAGCCATAGCAAATCACTGTC 489
Query 482 ATGAGTTACAAGAACTT-GATCTCAGCAAAAGCTTGAAAATTACAGACCGTTCACTTTAT 540
||||| |||| | | || ||| | ||||||||||||||| |||| |||| ||| || |||
Sbjct 490 ATGAGCTACACG-ATTTGGATTTAAGCAAAAGCTTGAAACTTACTGACCATTCCCTATAT 548
Query 541 GCACTTGCTCATGGTTG-CCCAGACCTCACAAAACTCAACCTTAGTGGCTGCACTTCATT 599
| || |||| |||||| | | ||||||| || ||||||||||||| ||||||||| ||
Sbjct 549 TCTCTGGCTCGTGGTTGTACTA-ACCTCACTAAGCTCAACCTTAGTGCCTGCACTTCGTT 607
Query 600 CAGCGACACTGCTATTGCGTATTTGACCAGATTCTGCAGAAAGCTTAAAGTTTTGAATCT 659
||||||||||||| | ||| ||||||| ||||| ||||| ||||| ||| || |||||||
Sbjct 608 CAGCGACACTGCTCTCGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAATTCTGAATCT 667
Query 660 TTGCGGATGTGTCAAAGCTGTAACTGACAATGCCTTGGAGGCTATTGG-GAATAACTGCA 718
||| || ||||| |||||||| |||||||| | ||| |||||||||| ||| |||||||
Sbjct 668 TTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGAA-AACTGCA 726
Query 719 ATCAGATGCAGTCACTAAACTTGGGATGGTGTGAGAATATCAGTGATGATGGGGTAATGA 778
||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 727 ATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGGAGTTATGA 786
Query 779 GTTTAGCTTATGGCTGTCCAGATCTCAGGACCCTTGACCTCTGCGGCTGTGTTCTTATTA 838
||||||||||||| ||||| ||| | || |||||||| || || || |||||||| ||||
Sbjct 787 GTTTAGCTTATGGTTGTCCTGATTTAAGAACCCTTGATCTTTGTGGTTGTGTTCTAATTA 846
Query 839 CAGATGAGAGTGTGGTAGCTCTAGCAGACT-GGTGTGTCCACTTGAGGTCACTGGGGCTA 897
||||||||||||| || ||| | || || | ||||| | |||||||||||| |||| ||
Sbjct 847 CAGATGAGAGTGTTGTGGCTTTGGC-GAATCGGTGTATACACTTGAGGTCATTGGGATTA 905
Query 898 TACTATTGCAGAAACATAACAGACAGAGCAATGTACTCGCTAGCTCAAAGCGGGGTAAAG 957
||||| ||||||||||| || |||||||| |||||||| ||||||| ||||| ||||||
Sbjct 906 TACTACTGCAGAAACATTACCGACAGAGCGATGTACTCTTTAGCTCAGAGCGGAGTAAAG 965
Query 958 AACAAAC-CGGGATCGTGGAAATCGGTTAAGAAAGGTAAATACGATGAAGAAGGACTGAG 1016
||||||| || ||| |||| | |||| |||||||| |||| ||||||||||||||| ||
Sbjct 966 AACAAACACGAGAT-GTGGCGAGCGGTAAAGAAAGGCAAATTCGATGAAGAAGGACTAAG 1024
Query 1017 AAGTCTCAACATTAGCCAATGCACTGCCCTTACACCTTCAGCGGTTCAAGCTGTTTGCGA 1076
||| || |||||||||||||||||| ||| |||||||||||||||||||| || |||||
Sbjct 1025 AAGCCTTAACATTAGCCAATGCACTTACCTAACACCTTCAGCGGTTCAAGCGGTCTGCGA 1084
Query 1077 TTCATTTCCC-GCACTTCACACATGCTCAGGAAGGCATTCGCTTGTCATGAGCGGCTGTC 1135
| |||| ||| ||||| ||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 1085 TACATT-CCCTGCACTCCACACTTGCTCAGGCAGGCATTCACTTGTCATGAGCGGTTGTC 1143
Query 1136 TGAA-CTTAACAA-CTGTGCACTGTGCTTGTATCCTTCAGGCTCATCGTGCACAC 1188
|||| || | ||| |||| || ||||||||||||||||||||||| || || |||
Sbjct 1144 TGAATCT-A-CAATCTGTTCATTGTGCTTGTATCCTTCAGGCTCACCGGGCTCAC 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5