BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21430.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313035 jgi|Araly1|313035|fgenesh1_pm.C_scaffold_1001815 1842 0.0
> Ahg313035 jgi|Araly1|313035|fgenesh1_pm.C_scaffold_1001815
Length=1173
Score = 1842 bits (997), Expect = 0.0
Identities = 1118/1177 (95%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAAATCAAGATTCTGGTTTTGATTATCGGTGCAGGACCAGCCGGTTTAGCA 60
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAGAGATCAAGATTCTGGTTCTGATTATCGGTGCAGGACCAGCCGGGTTAGCA 60
Query 61 ACATCAGCTTGTCTTAACCGGTTGAACATACCAAACATAGTAGTGGAAAGAGATGTTTGC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACATCAGCTTGTCTTAACCGGTTAAACATACCAAACATAGTAGTGGAAAGAGATGATTGC 120
Query 121 AGTGCCTCTCTGTGGAAAAGAAGGTCTTACGATCGTCTCAAGCTCCACCTCGCAAAGCAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGTGCCTCTCTGTGGAAAAGAAGGTCTTACGATCGTCTCAAGCTTCACCTCGCAAAGCAA 180
Query 181 TTCTGTCAACTCCCTCACATGCCATTCCCCTCAAACACTCCTACCTTCGTCTCCAAGCTA 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TTCTGTCAACTCCCTTACATGCCATTCCCCTCAAACGCTCCTACCTTCGTCTCCAAGCTA 240
Query 241 GGTTTCATCAATTACCTTGACGAATACGCCACACGTTTCAACGTAAACCCTAGGTACAAC 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GGGTTCATCAATTACCTTGACGAATACGCCACACGTTTCAACGTAACCCCTAGGTACAAC 300
Query 301 CGGAACGTCAAATCCGCGTACTTCAAAGATGGTCAATGGATCGTGAAGGTGGTGAACAAA 360
||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 301 CGGAATGTCAAATCCGCCTACTTCAAAGATGGTCAGTGGATTGTGAAGGTGGTAAACAAA 360
Query 361 ACCACGGCGTTGATAGAAGTTTACTCGGCGAAGTTTATGGTTGCTGCGACGGGAGAGAAT 420
|| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ACTACGGCGTTAATAGAAGTCTACTCGGCGAAGTTTATGGTTGCTGCGACGGGGGAGAAT 420
Query 421 GGCGAAGGTGTGATTCCAGAGATTCCGGGGCTTGTAGAGAGCTTTCAAGGAAAGTATTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGCGAAGGTGTGATTCCAGAGATTCCGGGGCTTGTAGAGAGCTTTCAAGGAGAGTATTTG 480
Query 481 CACTCAAGTGAGTACAAGAACGGAGAGAAGTTCGCTGGAAAAGATGTTTTGGTCGTCGGA 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 CACTCAAGTGAGTACAAGAACGGCGAGAAGTTCGCCGGAAAAGATGTTTTGGTCGTCGGA 540
Query 541 TGTGGAAATTCTGGCATGGAGATTGCTTATGATCTATCTAAGTGCAACGCTAATGTCTCC 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 TGTGGAAATTCCGGCATGGAGATTGCTTATGATCTGTCTAAGTGCAACGCTAAGGTCTCC 600
Query 601 ATCGTTGTTCGTAGCCAGGTGCACGTGTTAACGAGATGTATCGTACGGATAGGAATGTCG 660
|||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 601 ATCGTTGTTCGTAGCCCGGTGCACGTGTTGACGAGATGGATCGTAAGGATAGGAATGTCG 660
Query 661 TTGCTCAGGTTTTTCCCGGTAAAATTAGTTGACCGTTTGTGTCTATTACTAGCGGAGCTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCTCAGGTTTTTCCCGGTAAAATTAGTTGACCGTTTGTGTCTATTACTAGCGGAGCTG 720
Query 721 AGGTTTCGGAATACTTCGAGATATGGGCTTGTAAGACCCAATAATGGCCCATTTC-TGAA 779
|| ||| ||||||||| |||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 721 AGCTTTGGGAATACTTTGAGATATGGGCTTGTAAGACCCAAGAATGGCCCATT-CATGAA 779
Query 780 CAAGCTAATCACCGGCCGGTCAGCTACCATTGACGTCGGCTGCGTCGGAGAGATAAAGTC 839
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGCTAATCACCGGCCGGTCACCTACCATTGACGTCGGCTGCGTCGGAGAGATAAAGTC 839
Query 840 CGGCAAGATTCAGGTTGTGACGTCGATTAAGCGTATAGAAGGGAAGACAGTAGAATTCAT 899
|||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||| |
Sbjct 840 CGGCAAGATTCAGGTTGTGACGTCTATTAAACGTATAGAAGGGAAGAGAGTTGAATTCGT 899
Query 900 CGATGGAAACACCAAAAATGTGGACTCCATTGTCTTCGCAACTGGTTACAAAAGCAGCGT 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGATGGGAACACCAAAAATGTGGACTCCATTGTCTTCGCAACTGGTTACAAAAGCAGCGT 959
Query 960 TTCAAAATGGCTTGAGGTCGATGATGGAGATCTGTTCAACGAGAATGGGATGCCGAAACG 1019
| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TACAAAATGGCTTAAGGTCGATGATGGAGATCTGTTCAACGAGAAGGGGATGCCGAAACG 1019
Query 1020 CGAGTTCCCGGATCACTGGAAGGGGAAGAATGGTTTGTATAGTGCTGGCTTTGGGAAACA 1079
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1020 CGAGTTCCCGGATCACTGGAAGGGGAAGAATGGTTTGTATAGTGTTGGGTTTGGGAGACA 1079
Query 1080 AGGCTTGGCTGGTATTTCAAGAGATGCTCGGAACATTGCTAGAGACATTGATTCTCTGGT 1139
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1080 AGGCTTGGCTGGTATTTCAAGAGATGCTCAAAACGTTGCTAGAGACATTGCTTCTCTGGT 1139
Query 1140 TTGTGGGAGAAGCAGCAAGAACAAGCTTTCCAAATAA 1176
|||| |||||| | | |||||||||||||||||||
Sbjct 1140 TTGTCAGAGAAGTA--A-GAACAAGCTTTCCAAATAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5