BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21440.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1 1749 0.0
Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1 787 0.0
> Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1
Length=1197
Score = 1749 bits (947), Expect = 0.0
Identities = 1083/1148 (94%), Gaps = 12/1148 (1%)
Strand=Plus/Plus
Query 30 CTTCACTCTCCAAC-GGTT-CT-GTACTATCTTCAGAGCTTCGAGAATGTCGATGTTAAT 86
|||||||||||||| | || | || |||||| ||||||||| |||||||||||||||
Sbjct 1 CTTCACTCTCCAACAGTTTGGTAATAATATCTTGTGAGCTTCGAAAATGTCGATGTTAAT 60
Query 87 GGCGGCCAAATCCACTTCACTCTTTAGCTCAAACCCTACAATTTCAGCTAAAATAGGGCA 146
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 61 GGCGGCCAAATCCACTTCACTCTTTAGCTCAAACCCAACAATTTCAGCTAGAATCGGGCA 120
Query 147 AAACCCTCGCGGC-GTCAGATCGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACC 205
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCCTCGC-GCTGTCAGATCGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACC 179
Query 206 GTCTGATTGAAGAGCAAGGTGCTGTGCTTATTCCCGGAGTCTACGACGCATTATCTGCGG 265
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 GTCTGATCGAAGAGCAAGGCGCTGTGCTTATTCCCGGAGTCTACGACGCATTATCGGCGG 239
Query 266 CTATTGTGCAGCAGACCGGATTCTCCGCCGCATTAATCTCCGGTTACGCCCTCTCCGCCG 325
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 CTATTGTGCAGCAGACCGGATTCTCCGCCGCATTAATCTCCGGTTACGCTGTCTCCGCCG 299
Query 326 TAACTTTGGGAAAACCAGATTTCGGTTTGATAACACCTCCGGAGATGGCAGCAACGGCGA 385
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 TAACTTTGGGAAAACCCGATTTCGGTTTGATAACACCGCCGGAGATGGCAGCAACGGCGA 359
Query 386 GATCAGTGTGTGCTGCGGCTCCAAAGATTCCAATCATTGCAGATGCAGATACTGGTGGAG 445
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GATCAGTGTGTGCTGCTGCTCCAAAGATTCCAATCATTGCCGATGCAGATACTGGTGGAG 419
Query 446 GAAATGCTCTCAATGTTCAAAGAACCGTCAAGGACTTAATCGCAGCAGGTGCTGCTGGTT 505
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GAAATGCTCTCAATGTTCAAAGAACCGTTAAGGACTTAATCGCAGCAGGTGCTGCTGGTT 479
Query 506 GCTTCCTTGAGGACCAGGCATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTTCCTTGAGGACCAGGCATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCA 539
Query 566 TACCTGCGGAGGAACACGCTGCTAAAATAGCATCAGCAAGAGACGCTATTGGAGATGCTG 625
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 TACCTGCGGAGGAGCACGCTGCTAAAATAGCATCGGCAAGAGACGCTATTGGAGATGCTG 599
Query 626 ACTTTTTTCTAATCGCTAGGACTGATGCTCGTGCACTTTCCGCAAAAACAGGACTTTCAG 685
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTTTTCCTAATCGCTAGGACTGATGCTCGTGCACTTTCCGCAAAAACAGGACTTTCAG 659
Query 686 ACGCCATTGACCGTGCTAATCTTTATATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGG 745
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 ACGCCATTGACCGTGCTAATCTTTACATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGG 719
Query 746 CACCGAGGGACGATGACGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGTTACAGACTGT 805
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 720 CACCGAGGGACGATGATGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGCTACAGATTGT 779
Query 806 GTAACATGCTTGAAGGTGGACGCACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTAACATGCTTGAAGGTGGACGCACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGG 839
Query 866 GTTTTCACTTGATCGCACACCCACTTACCTCGCTCTATGCGTCGACTCGAGCTCTTGTCG 925
| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
Sbjct 840 GCTTTCATTTGATCGCACACCCACTTACCTCGCTTTATGCATCGACCCGAGCTCTTGTGG 899
Query 926 ATGTTCTTAAGATTCTCAAGGAGAAAGG-AACCACCAAAGACCACTTAGAAAAGATGATA 984
|||| || |||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 900 ATGTACTCAAGATTCTCAAGGA-AAAGGGAACCACCAAAGATCACTTAGAAAAGATGATT 958
Query 985 ACTTTCGAAGAGTTTAACCGTTTGGTGAACTTGGATTCATGGTATGAGCTCGAAACCAAG 1044
|||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||| |||
Sbjct 959 ACTTTCGAGGAGTTTAACAGTTTGGTGGACTTGGATTCATGGTATGAGCTTGAAACTAAG 1018
Query 1045 TACTCTAACCTCAGAAACGCTCTAGGGGA-AACAAAATAATGAGATTCTGATTACTCTGT 1103
|||||||||||||||||||| || ||| | |||||| | |||||||||||| ||||||
Sbjct 1019 TACTCTAACCTCAGAAACGCGCTTGGG-ACAACAAAGTGATGAGATTCTGACAACTCTGG 1077
Query 1104 CCACAATCGAAGCTCTTG--CAATGTATCATCAATAATGTTATCTTCTTTTTTCACTTGT 1161
||||||| |||||||||| |||||| |||||||||||||| |||| |||||||||||||
Sbjct 1078 CCACAATGGAAGCTCTTGGACAATGTTTCATCAATAATGTTTTCTT-TTTTTTCACTTGT 1136
Query 1162 TTGTATCA 1169
|||| |||
Sbjct 1137 TTGTGTCA 1144
> Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1
Length=1101
Score = 787 bits (426), Expect = 0.0
Identities = 855/1058 (81%), Gaps = 45/1058 (4%)
Strand=Plus/Plus
Query 58 TTCAGAGCTTCG-AGAATGTCGATGTTAATGGCGGCCAAATCCACTTCACTCT-TT---- 111
|||| ||||||| | |||||||||||||||||| | ||| ||||||| |||| ||
Sbjct 44 TTCA-AGCTTCGAACAATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAG 102
Query 112 -AGCTCAAACCCT-ACAATTTCAGCTAA-AATAGGGCAAAACCCTC--GCGGCGTCAGAT 166
|||| ||| ||| || |||| | || | | | | ||||| | |||||| ||||
Sbjct 103 CAGCTTAAA-CCTGACGGCTTCA-CCAACATTCCGACGGAACCCACGAGCGGCG--AGAT 158
Query 167 CGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATTGAAGAGCAAGGTG 226
| | ||||||||| |||||| || ||||| |||| |||||||||||||| |||||
Sbjct 159 TGATGAATCCGACGGCGAGAATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCA 218
Query 227 CTGTGCTTATTCCCGGAGT-CTACGACGCATTATCTGCGGCTATTGTGCAGCAGACCGGA 285
||| || || || ||| | ||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 219 TTGTTCTCATGCCTGGA-TGCTACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGA 277
Query 286 TTCTCCGCCGCATTAATCTCCGGTTACGCCCTCTCCGCCGTAACTT-TGGGAAAACCAGA 344
|||||||| | || || |||||||||||| | |||| | | ||| |||||||||| ||
Sbjct 278 TTCTCCGCTGGTTTTATATCCGGTTACGCCTTATCCG-CTTCTCTTCTGGGAAAACCCGA 336
Query 345 TTTCGGTTTGATAACACCTCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGCTG-CGG 403
|||||||||| ||||||| ||||||||||| || ||||| || || |||||||| | | |
Sbjct 337 TTTCGGTTTGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGC-GTCAG 395
Query 404 CTCCAAAGATTCCAATCATTGCAGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTC 463
||||||| || ||||||||||||||||| ||||| ||||| |||||||| || || ||||
Sbjct 396 CTCCAAATATACCAATCATTGCAGATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTC 455
Query 464 AAAGAACCGTCAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGG 523
|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 456 AAAGAACCGTAAAGGATTTGATTGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAG 515
Query 524 CATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAACACG 583
|||||||||||| |||||| ||||||||||| ||| |||| ||||| || || || || |
Sbjct 516 CATGGCCAAAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATG 575
Query 584 CTGCTAAAATAGCATCAGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTTCTAATCGCT 642
| |||||||||||||||| ||||||||||| ||||| | ||||||| || || | ||
Sbjct 576 CCACTAAAATAGCATCAGCCAGAGACGCTATCGGAGACT-CTGACTTCTTCCTTGTTGCA 634
Query 643 AGGACTGATGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTGAC-CGT 699
|| || |||| | ||||| |||| | |||||| |||| ||| ||||||||||| | |||
Sbjct 635 AGAACAGATG-TGCGTGCTACTT-CTGCAAAATCAGGTCTTGAAGACGCCATTG-CGCGT 691
Query 700 GCTAATCTTTATATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGAT 759
| |||||| || |||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct 692 GTTAATCTCTACATGGAGGCGGGAGCTGATGCATCATTTGTAGAGGCACCGAGAGACGAC 751
Query 760 GACGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGTTACAGACTGTGTAACATGCTTGAA 819
|| ||||| |||||||| |||| |||||||||||||| ||| | || |||||| |||||
Sbjct 752 GATGAGCTCAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTTTGCAACATGATTGAA 811
Query 820 GGTGGACG-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGTTTTCACTTGAT 878
|| ||| | ||| |||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 812 GGAGGA-GTCACACCATTGCACACGCCTGTTGAGCTTAAAGAAATGGGGTTTCACTTGAT 870
Query 879 CGCACACCCACTTACCTCGCTCTATGCGTCGACTCGAGCTCTTGTCGATGTTCTTAAGAT 938
|| ||||| |||||| | |||||||| |||||||||||||| || |||||||| ||||
Sbjct 871 CGTTCACCCGCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTTGATGTTCTCAAGAC 930
Query 939 TCTCAAGGAGAAA-GGAACCAC-CAAAGACCACTTAG-AAAAGATGA-TAACTTTCGAAG 994
||| || || ||| |||| ||| | | || ||||| | |||||||| || |||| || |
Sbjct 931 TCTTAAAGA-AAACGGAAGCACTCGA-GATCACTT-GCAAAAGATGGCTA-CTTTTGAGG 986
Query 995 AGTTTAACCGTTTGGTGAACTTGGATTCATGGTATGAGCTCGAAAC-CAAGTACTCTAAC 1053
| || || |||| ||| | || |||||||||| |||||||||| | | || || |||
Sbjct 987 AATTCAATAGTTTAGTGGATTTAGATTCATGGTTTGAGCTCGAAGCTCGC-TATTCAAAC 1045
Query 1054 CTCAGAAACGCTCT-AGGGGAAACAAAATAATGA-GAT 1089
||||| |||||||| ||| || |||||| |||| |||
Sbjct 1046 CTCAGGAACGCTCTTAGGACAA-CAAAATCATGAAGAT 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5