BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21450.1
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472381 jgi|Araly1|472381|fgenesh2_kg.1__2335__AT1G21450.1 3531 0.0
Ahg911952 jgi|Araly1|911952|Al_scaffold_0001_2206 891 0.0
> Ahg472381 jgi|Araly1|472381|fgenesh2_kg.1__2335__AT1G21450.1
Length=2267
Score = 3531 bits (1912), Expect = 0.0
Identities = 2158/2276 (95%), Gaps = 20/2276 (1%)
Strand=Plus/Plus
Query 1 AGAAAAATCAGAACCCAAAGCCAAAGCGTTTTTATCATTTCTGTCTTCTTCTGTGTAAAC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAAATCAGAAACCAAAGCCAAAGCGTTTTTATCATTTCTGTCTTCTTCTGTGTAAAC 60
Query 61 AGTAAGACCCCAAAGGTCAAACCTTTAGGCTTTGTTTCTTCCTTTAAGGCTTTTTTCCGA 120
|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 61 AGTAAGACCCAAAAGGTCAAACCTTTAGGCTTTGTTTCTTCCTTT-AGGC--TTTTCCGA 117
Query 121 CGTTTATATCAGATTTCTTCTTGTCAATTTCTTCATTTGGACAACCTCCATAATCCAAGA 180
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 118 AGTTTATATCAGATTTCTTCTTGTCAATTTCTTCATTTGGGCATCCTCCATAATCCAAGA 177
Query 181 CCGACCCTTTTCCTCTAATCTCTCCTGTTGCAGCTGAATGGTGGAACAAACTGTGGTTAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCGACCCTTTTCCTCTAATCTCTCCTGTTGCAGCTGAATGGTGGAACAAACTGTGGTTAG 237
Query 241 AGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAG 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAACATATTAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAG 297
Query 301 GAACCCGAAGCTTTACACGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCA 360
|||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 298 GAACCCGAAGCTTTACTCGTTGAATGAGAATGGTAACAACAATGTTGTCACTTCTGCTCA 357
Query 361 AATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAGCCA 420
||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 358 AATCTTTGATCAAGACAGGTCCAAGAACCCTTGTCTAACTGATGATTCTTACCCAAGCCA 417
Query 421 AAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGG 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGTTATGAGAAGTACTTTCTCGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGG 477
Query 481 CTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGACTCATTTCCTTATCAGTCAAGACC 540
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTCCGGTGCTTCGGTTAGCTCATTTGGCTCTTTAGACTCATTTCCTTATCAGTCAAGACC 537
Query 541 AGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTAC 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 GGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTTGATTCAACCTCTACTTCATCTAC 597
Query 601 AAGGCTTTTGGGAGATTACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGA 660
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 598 GAGGCTTTTGGGAGATTACCAAGCAGTTTCTTACAGTCCGAGCATGGATGTGGTGGAGGA 657
Query 661 GTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGGCGA 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 GTTTGATGATGAGCAAATGAGATCAAAGATTGAAGAGCTTGAAAGAGCGCTTCTCGGCGA 717
Query 721 TGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTA 780
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 718 TGAAGATGATAAAATGATTGGAATAGATAATCTCATGGAGATTGACAGCGAATGGTCATA 777
Query 781 CCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAAGAATCATCGTCTGCAGATTCCAA 840
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 778 CCAAAACGAAAGCGAACAGCATCAGGACTCACCCAAAGAATCATCATCTGCAGATTCCAA 837
Query 841 CTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATC 900
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 CTCTCATGTAAGTAGCAAAGAAGTGGTGTCGAAAGCCACTCCAAAGCAAATCTTGATATC 897
Query 901 TTGTGCTCGTGCGCTATCTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCT 960
||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 898 TTGTGCTCGTGCGTTATCCGAAGGGAAATCAGAAGAAGCTTTGTCAATGGTAAATGAGCT 957
Query 961 GAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGTGGA 1020
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 GAGGCAGATTGTTTCAATCCAAGGAGATCCTTCTCAGAGAATCGCAGCTTACATGGTGGA 1017
Query 1021 AGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAA 1080
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1018 AGGTCTAGCTGCAAGAATGGCTGCTTCCGGAAAATTCATATACAGAGCATTGAAATGCAA 1077
Query 1081 AGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCTTG 1140
||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1078 AGAACCTCCTTCAGATGAGAGACTCGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCTTG 1137
Query 1141 TTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGA 1200
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1138 TTTCAAATTCGGGTTTTTAGCAGCTAATGGTGCGATAATTGAAGCAATAAAAGGTGAAGA 1197
Query 1201 AGAAGTTCACATAATCGATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACG 1260
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 GGAAGTTCACATAATCGATTTCGATATAAACCAAGGTAACCAATACATGACACTGATACG 1257
Query 1261 AAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGACCC 1320
||| | |||||||| || |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1258 AAGTGTAGCTGAGTTACCCGGTAAACGTCCTCGCCTGAGGTTAACCGGAATCGATGACCC 1317
Query 1321 TGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACT 1380
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 1318 TGAATCAGTCCAACGCTCCATCGGAGGGTTAAGAATCATCGGTTTAAGACTCGAGCAACT 1377
Query 1381 CGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCAATGCCTTCAAAGACTTCGATTGT 1440
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 CGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCAGTGCCTTCAAAGACTTCGATTGT 1437
Query 1441 CTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCA 1500
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1438 CTCTCCATCAACACTCGGTTGCAAACCTGGAGAAACCTTAATTGTGAACTTTGCATTCCA 1497
Query 1501 ACTTCACCACATGCCTGACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCA 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1498 GCTTCACCACATGCCTGACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTCCA 1557
Query 1561 CATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACACAAA 1620
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1558 CATGGTCAAAAGCTTAAACCCAAAGCTCGTCACAGTCGTTGAACAAGACGTGAACACAAA 1617
Query 1621 CACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGA 1680
|||||| || ||||| ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1618 CACTTCCCCATTCTTCCCCAGATTCGTAGAGGCTTACGAGTACTACTCAGCGGTTTTCGA 1677
Query 1681 GTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTG 1740
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATCTCTAGACATGACACTTCCGAGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTG 1737
Query 1741 TCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATA 1800
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TCTTGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATA 1797
Query 1801 CGAGGCTGCGGGAAAATGGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAAT 1860
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1798 CGAGGCTGCCGGAAAATGGAGAGCGAGGATGATGATGGCTGGATTCAATCCAAAACCAAT 1857
Query 1861 GAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAAGTA 1920
||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1858 GAGCGCTAGAGTAACCAACAATATACAGAACCTCATAAAGCAACAATATTGCAATAAGTA 1917
Query 1921 CAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGT 1980
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1918 CAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAAGAGAAAAGCTTAATCGT 1977
Query 1981 TGCTTCAGCTTGGAGGTAAGATAAGTGACAAGAGCATATAGTCTTTATGTTTCATAAAA- 2039
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1978 TGCTTCAGCTTGGAGGTAAGATAAGTGACA-GAGCATA--GTCCTTATGTTTCATAAAAA 2034
Query 2040 CA-TAATTATGTTTTTACTGTAATCTTGGGTTATTGTGTAACTGGTTAAATCATCTCCAT 2098
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2035 CACTG-TTATGTTTTTACTGTAATCTTGGGTTATTGTGTAACTGCTTAAATCATCTCCAT 2093
Query 2099 GTATTATTA---CCAGAGGTTAGGGGTGATCACAGGTACTAAAAGCTAATCTAACACTTA 2155
||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 2094 GTATTATTATTACCAGAGGTCAGGGGTGATCACAGGTACTAAA-GTTAATCTAACACTTT 2152
Query 2156 -TGGAAGAAtttttctttcttttttttCCCTATTATATAAAAATAATTAGAGTTTTGGTT 2214
| ||| || |||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 2153 CTTGAACAAATTTTCTTTCTTTTTTT-CTCTATTGTATAAAAATAATTAGAGTTTTGGTT 2211
Query 2215 CTAAACCTATTTG-C--TAAGTGTGAATGA--GTCTTTACATGTTCATATTTCAGT 2265
|||| |||||||| | ||||||||||||| || |||||||||||||||||||||
Sbjct 2212 CTAAGCCTATTTGTCCATAAGTGTGAATGAAAGTGTTTACATGTTCATATTTCAGT 2267
> Ahg911952 jgi|Araly1|911952|Al_scaffold_0001_2206
Length=1773
Score = 891 bits (482), Expect = 0.0
Identities = 560/597 (94%), Gaps = 7/597 (1%)
Strand=Plus/Plus
Query 1405 CAAATT-CAAAGCAATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCA 1463
||| || || |||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1007 CAACTTGCAGAGCAGTGCCTTCAAAGACTTCAATTGTCTCTCCATCGACACTCGGTTGCA 1066
Query 1464 AACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTGACGAGA 1523
|||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1067 AACCCGGAGAAACCTTAATTGTGAACTTTGCATTCCAGCTTCACCACATGCCAGACGAGA 1126
Query 1524 GTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAA 1583
||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 1127 GTGTCACAACAGTGAACCAGCGGGACGAGCTACTCCACATGGTCAAAAGCCTGAACCCAA 1186
Query 1584 AGCTTGTCACGGTCGTTGAACAAGACGTGAACACAAACACTTCACCGTTCTTTC-CCAGA 1642
|||| ||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 1187 AGCTCGTCACAGTCGTTGAACAAGACGTGAACACAAACACTTCCCCGTTC-TTCTCCAGA 1245
Query 1643 TTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCA 1702
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1246 TTCATAGAGGCTTACGAGTACTACTCAGCGGTTTTCGAGTCTCTAGACATGACACTTCCA 1305
Query 1703 AGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAAC 1762
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 1306 AGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTGTCTTGCTAGAGACATTGCCAAC 1365
Query 1763 ATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAATGGAGA 1822
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1366 ATCGTTGCTTGCGAAGGAGAAGAGCGGATAGAGAGATACGAGGCTGCCGGAAAATGGAGA 1425
Query 1823 GCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAAT 1882
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1426 GCAAGGATGATGATGGCAGGATTCAATCCAAGACCAATGAGTGCTAAAGTAACCAACAAT 1485
Query 1883 ATACAAAACCTGATAAAGCAACAATATTGCAATAAGTACAAGCTTAAAGAAGAAATGGGT 1942
||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1486 ATACAGAACCTCATAAAGCAACAGTATTGCAATAGGTACAAGCTTAAAGAAGAAATGGGT 1545
Query 1943 GAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTT-G---CTTCAGCTTGGAG 1995
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1546 GAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTCGTTGCTTCAGCTTGGAG 1602
Score = 841 bits (455), Expect = 0.0
Identities = 512/540 (95%), Gaps = 1/540 (0%)
Strand=Plus/Plus
Query 659 GAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGGC 718
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCTCTTCTCGGC 420
Query 719 GATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCG 778
||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 421 GATGAAGATGAGAAAATGGTTGGAATAGATAATCTGATGGAGATTGACAACGAATGGTCG 480
Query 779 TACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAAGAATCATCGTCTGCAGATTCC 838
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 481 TACCAAAACGAAAGTGAACAGCATCAGGACTCGCCCAAAGAATCATCATCTGCAGATTCC 540
Query 839 AACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATA 898
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 541 AACTCTCATGTAAGTAGCAAAGAAGTGGTGTCGCAAGGCACTCCAAAGCAAATCTTGATA 600
Query 899 TCTTGTGCTCGTGCGCTATCTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAG 958
||||||||||||||| |||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 601 TCTTGTGCTCGTGCGTTATCCGAAGGGAAAGCAGAATTAGCTTTGTCAATGGTAAATGAG 660
Query 959 CTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGTG 1018
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CTGAGGCAGATTGTTTCGATCCAAGGAGATCCTTCTCAGAGAATCGCAGCTTACATGGTG 720
Query 1019 GAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGC 1078
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 721 GAAGGTCTAGCTGCAAGAATGGCTGCTTCAGGGAAATTCCTCTACAGAGCATTGAAATGC 780
Query 1079 AAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCT 1138
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAAGAGCCTCCTTCTGATGAGAGGCTTGCAGCTATGCAAGTCCTCTTTGAAGTCTGCCCT 840
Query 1139 TGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAA 1198
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 841 TGTTTCAAATTCGGGTTTTTAGCAGCTAATGGTGCGATAATTGAAGCAATCAAAGG-GAA 899
Score = 494 bits (267), Expect = 1e-138
Identities = 330/359 (92%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 218 ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGG 277
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGTGGAACAGACTGTGGTTAGAGAACATATTAAAGCGAGAGTCATGTCATTAGTGAGG 60
Query 278 TCTGCAGAGCCAT-C-CT-CA---TATAGGAACCCGAAGCTTTACACGTTGAATGAGAAT 331
| || ||||||| | || || ||||||||||||||||||||| |||||||||| |||
Sbjct 61 CCAGCTGAGCCATCCGCTACATCGTATAGGAACCCGAAGCTTTACTCGTTGAATGATAAT 120
Query 332 GGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATC-C 390
||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||| | |
Sbjct 121 GGTAACAACAATGGTGTCACTTCTGCTCAAATCTTTGATCCAGACAGGTCCAAGAA-CAC 179
Query 391 TTGTCTGACTGATGATTCTTACCCAAGCCAAAGTTATGAGAAGTACTTTCTTGATTCGCC 450
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TTGTCTGACTGATGATTCTTACCCAAGCCAAAGTTATGAGAAGTACTTTCTCGATTCGCC 239
Query 451 AACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTT-AGCTCATTTGGCT 509
| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 ACCAGATGAGTTTGTACAACATCCTATTGGCTCTGGTGCCTCGGTTCAGCTCATTTGGCT 299
Query 510 CTTTAGACTCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAG 568
|||| ||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 300 CTTTGGACTCGTTTCCGTATCAGCCAAGACCGGTTCTTGGATGTTCCATGGAATTTCAG 358
Score = 86.1 bits (46), Expect = 1e-15
Identities = 61/68 (90%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 1233 AAGGGAACCAATACATGACACTGATACGA-AGCATTGCTGAGTTGCCTGGTAAACGACCT 1291
|||||||||||||||||||||||||||| | | |||||||||| || |||||||| |||
Sbjct 893 AAGGGAACCAATACATGACACTGATACGGTA-CGTTGCTGAGTTACCCGGTAAACGTCCT 951
Query 1292 CGCCTGAG 1299
||||||||
Sbjct 952 CGCCTGAG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86541036640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5