BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21470.1 Length=357 Score E Sequences producing significant alignments: (Bits) Value Ahg335387 jgi|Araly1|335387|fgenesh1_pg.C_scaffold_1001952 265 2e-70 > Ahg335387 jgi|Araly1|335387|fgenesh1_pg.C_scaffold_1001952 Length=840 Score = 265 bits (143), Expect = 2e-70 Identities = 168/180 (93%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 32 CCTTTCCAAGTGAATCGCAGCTAGGAAGGCCGCAGCTTTACGGTGAATCTCGGGGCAAAG 91 ||||||| | ||||||||||||||||||||| ||||||| |||||||||| |||||| Sbjct 18 CCTTTCCTCGCGAATCGCAGCTAGGAAGGCCGTGGCTTTAC-ATGAATCTCGGCGCAAAG 76 Query 92 AGCTGCTGCTATTAAGAAAACCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA 151 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 77 AGCTGCTGCTATTAAGAAATCCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA 136 Query 152 CCGAGGAAACAATGAAAGCTATAATGCTGGCCAAAGAGGAAACCCGCAGGTTTGGCCACG 211 |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 137 CCGAGGAAGCAATGAAAGCTATAATGCTGGCCGAAGAGGATACCCGCAGGTTTGGCCACG 196 Score = 176 bits (95), Expect = 9e-44 Identities = 124/137 (91%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 214 ATAAAAATAGATAGGCAACGAGGACTTAATGAGCCTATTGAGGTTGAAAAGATGGAAATC 273 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 310 ATAAAAATAGTTGGGCAACGAGGATTTAATGAGCCTATTGAGGTTGAAAAGATGGAAACC 369 Query 274 AGGGCAATAAATATCCCATTTGGACTCCGTGCTAAGTACATTCTTGAGTTGTCA---G-- 328 ||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||| | Sbjct 370 AGGGCAATAAATATCCCATTTGGACCCCGTGCTAAGCACATTCTGGAGTTATCATATGAA 429 Query 329 GAAGCTCGGAAACTTGG 345 ||||||||||||||||| Sbjct 430 GAAGCTCGGAAACTTGG 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12705811137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5