BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21470.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg335387 jgi|Araly1|335387|fgenesh1_pg.C_scaffold_1001952           265    2e-70


> Ahg335387 jgi|Araly1|335387|fgenesh1_pg.C_scaffold_1001952
Length=840

 Score =  265 bits (143),  Expect = 2e-70
 Identities = 168/180 (93%), Gaps = 1/180 (1%)
 Strand=Plus/Plus

Query  32   CCTTTCCAAGTGAATCGCAGCTAGGAAGGCCGCAGCTTTACGGTGAATCTCGGGGCAAAG  91
            |||||||  | |||||||||||||||||||||  |||||||  |||||||||| ||||||
Sbjct  18   CCTTTCCTCGCGAATCGCAGCTAGGAAGGCCGTGGCTTTAC-ATGAATCTCGGCGCAAAG  76

Query  92   AGCTGCTGCTATTAAGAAAACCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA  151
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  77   AGCTGCTGCTATTAAGAAATCCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA  136

Query  152  CCGAGGAAACAATGAAAGCTATAATGCTGGCCAAAGAGGAAACCCGCAGGTTTGGCCACG  211
            |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct  137  CCGAGGAAGCAATGAAAGCTATAATGCTGGCCGAAGAGGATACCCGCAGGTTTGGCCACG  196


 Score =  176 bits (95),  Expect = 9e-44
 Identities = 124/137 (91%), Gaps = 5/137 (4%)
 Strand=Plus/Plus

Query  214  ATAAAAATAGATAGGCAACGAGGACTTAATGAGCCTATTGAGGTTGAAAAGATGGAAATC  273
            |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct  310  ATAAAAATAGTTGGGCAACGAGGATTTAATGAGCCTATTGAGGTTGAAAAGATGGAAACC  369

Query  274  AGGGCAATAAATATCCCATTTGGACTCCGTGCTAAGTACATTCTTGAGTTGTCA---G--  328
            ||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||   |  
Sbjct  370  AGGGCAATAAATATCCCATTTGGACCCCGTGCTAAGCACATTCTGGAGTTATCATATGAA  429

Query  329  GAAGCTCGGAAACTTGG  345
            |||||||||||||||||
Sbjct  430  GAAGCTCGGAAACTTGG  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5