BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21480.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472383 jgi|Araly1|472383|fgenesh2_kg.1__2337__AT1G21480.1 2643 0.0
Ahg923588 jgi|Araly1|923588|scaffold_104869.1 233 3e-60
> Ahg472383 jgi|Araly1|472383|fgenesh2_kg.1__2337__AT1G21480.1
Length=1608
Score = 2643 bits (1431), Expect = 0.0
Identities = 1554/1612 (96%), Gaps = 13/1612 (1%)
Strand=Plus/Plus
Query 33 AAAACATTTGAAGAAGCAAAACGAAG-AAACAGTGAGAGAGATAGAAATGGCGAGCTTAA 91
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 AAAACATTTAAAGAAGCAAAACGAAGAAAACACTGAGAGAGATAGAAATGGCGAGCTTAA 60
Query 92 CTAGTAATAAGCCTAGAAATTTTGGTGCGTATAGTCACTACGCTACTCCCTGCACTCGCA 151
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGTAATAAGCCTAGAAACTTTGGTGCGTATAGTCACTACGCTACTCCCTGCACTCGCA 120
Query 152 CGCACCAGATTGGAGCTCTTTTTCTCGTCGTCTCTACCTTCTTCGTCACTAGGCTTTTCG 211
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGCACCAGATTGGAGCTCTTTTTCTCGTCGTCTCCACCTTCTTCGTCACTAGGCTTTTCG 180
Query 212 ATCAGTGGTTCTCGGAATCCAATTCCGTTACTCCGGTGATTGATCTCCGTCGTACTTCTT 271
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 181 ATCAGTGGTTCTCAGAATCCAATTCCGTTTCTCCGGTGATTGATCTCCGCCGTACTTCTT 240
Query 272 CTTCTTACGGAATCAAAACTGATAACGGTATTATACGGTGGCCGGAGCGAGGTTATGGGT 331
||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 241 CTTCTTACGGAATCACGACTTATAACGGTATTCTACGGTGGCCGGAGCGAGGGTATGGGT 300
Query 332 CTCACCTCTCGCTGAAGATCTACGTTTATGATGAGAATGAGATCGACGGTCTTAAAGAGC 391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCACCTTTCGCTGAAGATCTACGTTTATGATGAGAATGAGATCGACGGTCTTAAAGAGC 360
Query 392 TGTTGTACGGTAGGGATGGTAGTGTTAAGACCACCGCATGCTTGAAAGGTCAATGGGGAT 451
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 361 TATTGTACGGTAGGGATGGTAGTGTTAAGACCACCGCGTGCTTGAAAGGTCAATGGGGTT 420
Query 452 CTCAGGTTAAAATTCACAAGTTGCTTTTGGAGTCCAAATTTAGGACGATTAAGAAAGATG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCAGGTTAAAATTCACAAGTTGCTTTTGGAGTCCAAATTTAGGACGATTAAGAAAGATG 480
Query 512 AAGCGGATTTGTTCTTTGTGCCAGCTTATGTTAAATGTGTGAGAATGTTGGGAGGTCTTA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGCGGATTTGTTCTTTGTGCCAGCTTATGTTAAATGTGTGAGAATGTTGGGAGGTCTTA 540
Query 572 ATGACAAGGAGATCAATCAGACCTATGTCAAGGTTTTGAGTCAAATGCCGTATTTCCGAA 631
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 ATGACAAGGAGATCAATCAGACCTATGTTAAGGTTTTGAGTCAAATGCCGTATTTCCGAA 600
Query 632 GATCTGGTGGTCGTGATCATATATTTGTTTTTCCGAGTGGTGCTGGAGCTCACTTGTTTA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATCTGGTGGTCGTGATCATATATTTGTTTTTCCGAGTGGTGCTGGAGCTCACTTGTTTA 660
Query 692 GATCCTGGTCAACATTTATCAACCGCTCTATTATCCTCACTCCCGAGGCTGACCGGACTG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCCTGGTCAACATTTATCAACCGCTCTATTATCCTCACTCCCGAGGCTGACCGGACTG 720
Query 752 ACAAGAAAGACACAACTGCCTTTAATTCATGGAAAGATATAATCATACCAGGAAACGTCG 811
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 721 ACAAGAAAGACACAACTGCCTTTAATACATGGAAAGATATAATCATACCAGGAAACGTGG 780
Query 812 ATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGCCTCTGTCAAAGAGGA 871
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGCCTTTGTCAAAGAGGA 840
Query 872 AGTATTTAGCAAATTATTTAGGTCGTGCACAAGGGAAGGCTGGTCGACTTAAATTGATTG 931
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 AGTATTTAGCAAATTATTTAGGTCGTGCCCAAGGGAAGGCTGGTCGACTTAAATTGATTG 900
Query 932 ACCTATCAAAGCAATTTCCAGATAAGCTAGAATGTCCAGATTTGAAGTTTAGCGGAACTG 991
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 901 ACCTATCAAAGCAATATCCAGATAAGTTAGAATGTCCAGACTTGAAGTTTAGCGGAACTG 960
Query 992 AAAAGTTTGGAAGGACAACATATTTTGAACATCTGAGGAATGCCAAGTTCTGCCTCGCTC 1051
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 AAAAGTTTGGAAGGACAACATATTTTGAACATCTGAGGAACGCCAAGTTCTGCCTCGCTC 1020
Query 1052 CTCGTGGGGAATCATCATGGACACTTCGCTTTTATGAATCATTCTTTGTGGAATGTGTCC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTCGTGGGGAATCATCATGGACACTTCGCTTTTATGAATCATTCTTTGTGGAATGTGTCC 1080
Query 1112 CGGTTCTTTTATCTGACCACGCCGAGCTGCCTTTCCAGAATGTTATCGACTATGCCCAAG 1171
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGGTTCTTTTGTCTGACCACGCCGAGCTGCCTTTCCAGAATGTTATCGACTATGCCCAAG 1140
Query 1172 TATCGATCAAATGGCCATCAACTCGAATAGGCTCAGAGTTTCTTGATTACTTAGCTTCAA 1231
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 TATCCATCAAATGGCCATCAACTCGAATAGGCGCAGAGTTTCTTGATTACTTAGCTTCAA 1200
Query 1232 TATCAGATAGAGACATAGAAGGAATGATAGCCCGAGGTCGG-AAGATTAGATGTTTGTTT 1290
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1201 TATCAGATAAAGACATAGAAGGAATGATAGCCCGAGGTCGGGAA-ATTAGATGTTTGTTT 1259
Query 1291 GTGTACGGTCCAGATTCCGCACCCTGCAGTGCGGTTAAAGGGATTCTATGGGAGCTTCAA 1350
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTGTACGGTCCAGATTCTGCACCTTGCAGTGCGGTTAAAGGGATTCTATGGGAGCTTCAA 1319
Query 1351 CGCAAAGTTAGACATTTCCAGCAATCGACTGAGACGTTTTGGCTGCACAATGGCAGTTTT 1410
|||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1320 CGCAAAGTGAGACATTTCCAGCAATCGACCGAGACGTTTTGGTTGCACAATGGCAGTTTT 1379
Query 1411 GTGAATAGAGAACTGGTCCAGTTCAGTAGCTGGAGACCTCCTATGCCTCTACCTTGACCG 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTGAATAGAGAACTGGTCCAGTTCAGTAGCTGGAGACCTCCTATGCCTCTACCTTGACCG 1439
Query 1471 GTTTCAACATTCCACTAGAATATCTTGTGTTTACGAAACAAAATGAATGATACATTTGAG 1530
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | |||||
Sbjct 1440 GTTTCAACATTCCACTAGAATATCTTGTTTTTACGAAA-AAA-TGAATGATAAAGTTGAG 1497
Query 1531 TACAGtttttttGTGAACTTGAtttttttGTACATATCAC-----TCT-T-CAGTGGAAT 1583
|||||||||||||| ||||||||||||| ||||||| ||| ||| | ||||| |||
Sbjct 1498 TACAGTTTTTTTGTAAACTTGATTTTTT-GTACATACCACAAGAATCTCTTCAGTGAAAT 1556
Query 1584 TTGTTTGACTAAAATTTGATAGAAAAATGACGAACCAACAAAATTGATGGCT 1635
|||||||| | ||||| |||||||||||||| |||||||||||||||| |||
Sbjct 1557 TTGTTTGAGTCAAATTCGATAGAAAAATGACTAACCAACAAAATTGATAGCT 1608
> Ahg923588 jgi|Araly1|923588|scaffold_104869.1
Length=302
Score = 233 bits (126), Expect = 3e-60
Identities = 164/180 (91%), Gaps = 12/180 (7%)
Strand=Plus/Plus
Query 737 AGGCTGACCGGACTGACAAGAAAGACACAACTGCCTTTAATTCATGGAAAGATATAATCA 796
|||||||||||| |||||||||||||||||||||| ||| | |||||||||
Sbjct 67 AGGCTGACCGGAGTGACAAGAAAGACACAACTGCC-----TTC------A-ATATAATCA 114
Query 797 TACCAGGAAACGTCGATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGC 856
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 115 TACCAGGAAACGTCGATGATGCTTTGACTAAAAATGGACAAGCTGATGTTCAGCCTTTGC 174
Query 857 CTCTGTCAAAGAGGAAGTATTTAGCAAATTATTTAGGTCGTGCACAAGGGAAGGCTGGTC 916
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 CTCTGTCAAAGAGGAAGTATTTAGCAAATTATTTAGGTCGTGCGCAAGGGAAGGCTGGTC 234
Score = 108 bits (58), Expect = 2e-22
Identities = 65/68 (96%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 539 ATGTT-A-AATGTGTGAGAATGTTGGGAGGTCTTAATGACAAGGAGATCAATCAGACCTA 596
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 ATGTTGAGAATGTGTGAGAATGTTGGGAGGTCTTAATGACAAGGAGATTAATCAGACCTA 61
Query 597 TGTCAAGG 604
||||||||
Sbjct 62 TGTCAAGG 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5