BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21490.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313041 jgi|Araly1|313041|fgenesh1_pm.C_scaffold_1001821 1247 0.0
> Ahg313041 jgi|Araly1|313041|fgenesh1_pm.C_scaffold_1001821
Length=1086
Score = 1247 bits (675), Expect = 0.0
Identities = 974/1114 (87%), Gaps = 37/1114 (3%)
Strand=Plus/Plus
Query 4 ATGTTATCTA-ATCTACCATATGATTTGATAGATGAAATACTTTCTAGGGTTCCAACAAA 62
|||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGTTATC-AGATCTACCATTTGATTTGGTAGATGAAATACTTTCTAGGGTTCCAACAAA 59
Query 63 ATCTCTCATACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACGATCATGG 122
|| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 60 ATTTCTCGTACGACTCCGATCTACTTGCAAACGATGGAATTCTCTATTTGACAATCATAG 119
Query 123 ATTTTCTAAGAAACACTTTGATAATGCCATGAAACAAAATATGTTTATCTTATTCCT-TG 181
|||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||| || ||
Sbjct 120 ATTTTCCAAGAAACACTTTGGTAATGCCATCAAACAAAGTATGTTTATCTTATT-CTCTG 178
Query 182 ATTTGAAtttttttACGATTAGTTGTGAACTCCAAAAACGGGATTGTACCTTACAACGTT 241
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 179 ATTTGAAATTTTTTACAATTAGTTGTGAACTCCAAAAACCCGATTG----TTACAACGTT 234
Query 242 ACTAGTTGTAAACTTAATCTAACAGAATGTATTTGTaaaaaaaaaTGTGAAGTGTTTGAA 301
| | |||||||| ||| ||||| |||||||||||| ||| | ||||| |||| ||||||
Sbjct 235 AGTCGTTGTAAAATTAGTCTAAAAGAATGTATTTGCAAAGGAGAATGTAAAGTATTTGAA 294
Query 302 GTTCTTCATTGCGACGGTTTACTCTTCGGCCTCACAAGA-TGTTTTGAAATTATAGTCTG 360
||||||| ||||||||||||||||| |||||||||| | ||||||||| ||||||||||
Sbjct 295 ATTCTTCACTGCGACGGTTTACTCTTAGGCCTCACAA-ACTGTTTTGAACTTATAGTCTG 353
Query 361 GAACCCATGTTTAAAGCAAACAAAGTGGATTGAACGACACATACATAAAGTACGTACTAC 420
|||||||||||||||||||||||||| |||||||| |||| | |||||| ||| |||| |
Sbjct 354 GAACCCATGTTTAAAGCAAACAAAGTTGATTGAACCACACTTCCATAAACTACATACT-C 412
Query 421 TAATACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 -CA-ACTCCTGGATATGCTTTTGGGTGCGATAAAAAATACGGTGATCGTCGATACAAGAT 470
Query 481 CTTGTTGTTTCCAGCAGCCAGCTGGCATTCCTGTAAATTCTGTTTGAAATATTTAGAGGT 540
||| ||||||| || | | | | ||||| ||||||| ||| |||||||||||||||
Sbjct 471 CTTATTGTTTCTAGTATCTGGAT---ATTCCCGTAAATTTTGTAAGAAATATTTAGAGGT 527
Query 541 TGAAATATATGACTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTGAAATTGATTTTCT 600
|||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 528 TGAAATATTTGATTTTACGTCTAACTCTTGGAGAGTTCTTAACGTTAAAATCGATTTTCT 587
Query 601 TCTTGAATTTCCTACTCGTTGGGTATCCTTG-AATGGGAATTCTTATTGGATTGGTGCAG 659
|||| |||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 588 GCTTGTTTTTCCTACTCGTTGGGTATCCTTGGAA-GGAAATTCTTATTGGATTGGTGCAG 646
Query 660 ATGAAAATACGCATGAAGGTGTCATTGTGACATTTGATTTTTCAGCTGAGATGTTTGGAC 719
|||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||
Sbjct 647 ATGAAAATACGCATGAAGGTTTCATTGTGAGATTTGATTTTTCAAATGAGATGTTCGGAC 706
Query 720 GTCTTTCTTTGCCTTTTTTGGCATATCCTTGTGAAGATCATCTTTCTATGTTCG-TTAAA 778
|||| ||||||||||||||||||||||||||||| || ||||||||| ||| || |||||
Sbjct 707 GTCTGTCTTTGCCTTTTTTGGCATATCCTTGTGACGAGCATCTTTCTTTGT-CGGTTAAA 765
Query 779 AATGATAGAATTTCGATATTACATCAAACG-CGTCATCCATATTCTGTGGAAATTTGGAT 837
|||||| ||||||||||||| || |||||| | ||| |||||||| | |||||||||||
Sbjct 766 AATGATCGAATTTCGATATTGCACCAAACGTCA-CATTCATATTCTATAGAAATTTGGAT 824
Query 838 GACGGGATCTGTGATAGATGGACAAAAAGTGTCTTGGAGCAAACTCATGAGAATTGATGC 897
|||||||||||||||||| |||||| || |||||||||||||| |||||||| ||||||
Sbjct 825 GACGGGATCTGTGATAGACGGACAAGAATTGTCTTGGAGCAAATTCATGAGAGTTGATGA 884
Query 898 TGAAAACTTTGATATTCGGTTCA-ACCTGCCTAATTTCTTCATTCAGGACGAAGAGAACA 956
||||||||||||||||||||||| | | || ||||| |||||| | || |||||||| |
Sbjct 885 TGAAAACTTTGATATTCGGTTCATAAATCCC-AATTTTTTCATTTATGATGAAGAGAATA 943
Query 957 AAGTCGTTGTATTTTGTGAT-AAAAAAGAAGGGGTTCATAGAGTTTAC-GTTATTGAAGA 1014
|| | |||||||||| |||| ||||||| || || |||| || ||| | |
Sbjct 944 AAATGGTTGTATTTTCTGATGAAAAAAGCAGAA----AT-GAGTATAGAGTT-T--AT-- 993
Query 1015 CTATAAATGTACGGAAGTTTATGCTAAAAAAGTCGACCATTATAAAGAGCCTGTCATCTA 1074
| |||||| |||||||||||||| | || ||||||| |||||||||||||| |||||||
Sbjct 994 C-ATAAATATACGGAAGTTTATGTTGAAGAAGTCGAAGATTATAAAGAGCCTATCATCTA 1052
Query 1075 TAATTATGTTCCCAGTTTGGTTCATATTCGCTAG 1108
||||||||||||||||| |||||||||||||||
Sbjct 1053 CAATTATGTTCCCAGTTTAGTTCATATTCGCTAG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5