BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21500.1
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472386 jgi|Araly1|472386|fgenesh2_kg.1__2340__AT1G21500.1 1009 0.0
> Ahg472386 jgi|Araly1|472386|fgenesh2_kg.1__2340__AT1G21500.1
Length=612
Score = 1009 bits (546), Expect = 0.0
Identities = 591/613 (96%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTT-TGTTACATCTCTTGCTTTTACATTTT 59
||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||
Sbjct 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTTCT-TTACATCGCTCGCTTTTACATTTT 59
Query 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCGCC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCACC 119
Query 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179
Query 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTAGGCGGTGCGCTATGGAGTTGGAAC 239
||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||
Sbjct 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTTGGGGGTGCATTTTGGAGTTGGAAC 239
Query 240 GCTCTGGCCGCTAAGGAGGAGGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTCTGACCGCTAAGGAGGATGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299
Query 300 AAGGAGAAGAAAGACCCGACCGTGACCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 AAGGAGAAGAAAGACCCGACCGTGAGCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359
Query 360 CGTAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGCAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419
Query 420 GAAGCAAAACCATCCTCTTCTTCTTCAGAATAGCATCCGAGCAACAATTTAAACCCTTTC 479
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GAAGCAAAACCATCTTCCTCTTCTTCAGAATAGCATCCAAGCAACAATTTAAACCCTTTC 479
Query 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCAA 539
Query 540 TTTATTCTTATGCTGATTTTGTGGTAGTAAATTCAAAAGCATTCTAGCTTGTCAGAAATC 599
|||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TTTACTCCTATGCTGATTTTGTGGTAGTAAATCCAAAAGCATTCTAGCTTGTCAGAAATC 599
Query 600 ATCACAATTAGAT 612
|||||||||||||
Sbjct 600 ATCACAATTAGAT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22568766864
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5