BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21510.1 Length=1318 Score E Sequences producing significant alignments: (Bits) Value Ahg472387 jgi|Araly1|472387|fgenesh2_kg.1__2341__AT1G21510.1 1419 0.0 > Ahg472387 jgi|Araly1|472387|fgenesh2_kg.1__2341__AT1G21510.1 Length=1090 Score = 1419 bits (768), Expect = 0.0 Identities = 1006/1115 (90%), Gaps = 40/1115 (4%) Strand=Plus/Plus Query 14 ACACATTATATACAATAAGCATCTCCATTTCCTGTTGT-AACCAATCCCTTTTAATAGTT 72 |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct 1 ACACATTATATACAATAAGCATCTCCATTTCCTGTT-TAAACCAATCCCTTTTAATA-TT 58 Query 73 ACTTTCTCTCGTACAGATTTTTCGAAAAAAGTATTGAAATCAAACTCTAGGAATGGGTTG 132 |||||||||| || ||||||||| | ||| ||| |||||||||||| Sbjct 59 ACTTTCTCTCCTAAAGATTTTTC---------A---AAA--AAA----AGGAATGGGTTG 100 Query 133 TTGTATCAGCAAATGCTCTCCAAAGTCGAAAGATTTCAAAGAAGCAGAAGAACCTCACGA 192 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 101 TTGTATCAGCAAATGCTCTCCAAAGACGAAAGATTTCAAAGAAGCAGAAGAATCTCATGA 160 Query 193 GAAGTACTGTTCTGTTCCAGAGAAGATGTTCATGTCTCGTTGTCCAAGTCGTGTTTCTCC 252 ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 161 GAAGTACTGTTATGTTCCAGAGAAGCTGTTCATGTCGCGTTGTCCAAGTCGTGTTTCTCC 220 Query 253 ACTTAATCTTCCGGAGAAAAACCGGTTTCATCCTATCCCTGTCCCGAATAAGTTTATCA- 311 |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| | Sbjct 221 ACTTAATCTTCCGGAGAAGAACCGGTTTAATCCTATCCCTGTCCCGGATAAGTTTAT-AC 279 Query 312 ATATCCCGGGTAAAGTAATCCCTCCCCCTTCTCCTGTGAAGTTGGCATCTTTCTCTCCAA 371 ||||||||| |||| | | |||| || ||||||| |||||||||||||||||||||| Sbjct 280 ATATCCCGGATAAACTCCTTCCTCTTTCTCCTCCTGTAAAGTTGGCATCTTTCTCTCCAA 339 Query 372 TCCAACCTTCAACCACAAGCAACTCTTCTCTCAGCTCATCAAACTCGTCACTTTCGACCG 431 |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| | Sbjct 340 TCCAACCTTCAACCACAAGCAACTCTACTCTCAGCTCATCAAGCTCCTCACTTTCGACAG 399 Query 432 CCTCTTCAGTTTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 491 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 CTTCTTCAGTCTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 459 Query 492 ACCAAGAGAATTCACATGTTGCTCGAAT-CAATTCCTTACGAGAAGCTTCTCTATCTATG 550 ||||||||||||| |||||||||||||| || ||| |||||||||||||||||||| ||| Sbjct 460 ACCAAGAGAATTCTCATGTTGCTCGAATTCA-TTCTTTACGAGAAGCTTCTCTATCAATG 518 Query 551 AAAACCACAAAACCGAGATATCCTAGCCGGTTTGATTCTCCGGTTATACCA-AGCCGGAA 609 ||||||||||||||| |||||||||||||||| |||||||||||| ||||| | |||| | Sbjct 519 AAAACCACAAAACCGGGATATCCTAGCCGGTTCGATTCTCCGGTTTTACCATA-CCGGTA 577 Query 610 TTCAACAACACCAAACAGAGCAAATGAAGATTCTAAAAGAGGATCAAATTGTTCTAAGAG 669 ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| Sbjct 578 TTCAACAACACCAAACAGAGCAAATGAAGATCCGAAAAGAGGACCAAATTGTTCTAAGAG 637 Query 670 AACTCGAGAGCTATCACCAAACCATCGTTCATTGACACGACAAAAGAGCTTTCGTCAAGA 729 ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 638 AACTCGAGAGCCATCACCAAACCATCGTGCATTGACACGACAAAAGAGTTTTCGTCAAGA 697 Query 730 TCAAGAAAGAGTTGTTATCTCTTCTTCATCAAACTCCTTAACCAAGGGAAAGTACTTGAA 789 ||||||||||||| |||| || ||||||||||| || |||||||||||||||||||| || Sbjct 698 TCAAGAAAGAGTTATTATGTCCTCTTCATCAAATTCTTTAACCAAGGGAAAGTACTTCAA 757 Query 790 ATCTCCATCTCCAAGCAGAAGATATGAGGGAAATTTCTTGAAATCACCATCTCCAAGCCG 849 ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| | Sbjct 758 ATCGCCATCTCCAAGCAGGAGATATGAGGGAAATTTCTTGAAATCTCCATCTCCAAGCAG 817 Query 850 GAGATTTGGTGTAGCCG-CGGCT-AGTTTGACGGT-----C--TCT-T-CTTGTGTAAGG 898 |||||||||| | | || || || | ||||||||| | ||| | ||||||||||| Sbjct 818 GAGATTTGGTAT-GACGGCGACTGA-TTTGACGGTAAAATCAGTCTCTTCTTGTGTAAGG 875 Query 899 AAAGATAGTTTAGATCTGTCTGGTCGCAAGATTTGTCATATGAGCAACAGATCAGAGCCT 958 ||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 876 AAAGATAGTTTAGATCTGTCTGGTCGCAAGACTTGTCAGAAGAGCAACAGATCAGAGCCT 935 Query 959 CGAATACATCGCATAAGTTCTAAGATCGACCAAACAATTATCAGAGAAGTAATCACAAAA 1018 || || |||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 936 CGGATTCATCGCATAAGTTCTAAGATCGACGAAAAAATTATCAGAGAAGTAATCACAAAC 995 Query 1019 GATAGGGAACCAGTGGTTCCAATATTTGAAGAAGTTGGCAATCCTTTGATTGATTTGGAT 1078 ||| ||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 996 CATAAGGAACCAGTGGTTCCAATATTCGAAGAAGTCGGCAATCCTCTGATTGATTTGGAT 1055 Query 1079 TGCTTTATCTTTCTTTAAGGAGAAACATTTGATTT 1113 |||||||||||||||||||||||| | ||| |||| Sbjct 1056 TGCTTTATCTTTCTTTAAGGAGAAGCTTTTAATTT 1090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49292931681 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5