BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21510.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472387 jgi|Araly1|472387|fgenesh2_kg.1__2341__AT1G21510.1 1419 0.0
> Ahg472387 jgi|Araly1|472387|fgenesh2_kg.1__2341__AT1G21510.1
Length=1090
Score = 1419 bits (768), Expect = 0.0
Identities = 1006/1115 (90%), Gaps = 40/1115 (4%)
Strand=Plus/Plus
Query 14 ACACATTATATACAATAAGCATCTCCATTTCCTGTTGT-AACCAATCCCTTTTAATAGTT 72
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 1 ACACATTATATACAATAAGCATCTCCATTTCCTGTT-TAAACCAATCCCTTTTAATA-TT 58
Query 73 ACTTTCTCTCGTACAGATTTTTCGAAAAAAGTATTGAAATCAAACTCTAGGAATGGGTTG 132
|||||||||| || ||||||||| | ||| ||| ||||||||||||
Sbjct 59 ACTTTCTCTCCTAAAGATTTTTC---------A---AAA--AAA----AGGAATGGGTTG 100
Query 133 TTGTATCAGCAAATGCTCTCCAAAGTCGAAAGATTTCAAAGAAGCAGAAGAACCTCACGA 192
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 101 TTGTATCAGCAAATGCTCTCCAAAGACGAAAGATTTCAAAGAAGCAGAAGAATCTCATGA 160
Query 193 GAAGTACTGTTCTGTTCCAGAGAAGATGTTCATGTCTCGTTGTCCAAGTCGTGTTTCTCC 252
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 161 GAAGTACTGTTATGTTCCAGAGAAGCTGTTCATGTCGCGTTGTCCAAGTCGTGTTTCTCC 220
Query 253 ACTTAATCTTCCGGAGAAAAACCGGTTTCATCCTATCCCTGTCCCGAATAAGTTTATCA- 311
|||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |
Sbjct 221 ACTTAATCTTCCGGAGAAGAACCGGTTTAATCCTATCCCTGTCCCGGATAAGTTTAT-AC 279
Query 312 ATATCCCGGGTAAAGTAATCCCTCCCCCTTCTCCTGTGAAGTTGGCATCTTTCTCTCCAA 371
||||||||| |||| | | |||| || ||||||| ||||||||||||||||||||||
Sbjct 280 ATATCCCGGATAAACTCCTTCCTCTTTCTCCTCCTGTAAAGTTGGCATCTTTCTCTCCAA 339
Query 372 TCCAACCTTCAACCACAAGCAACTCTTCTCTCAGCTCATCAAACTCGTCACTTTCGACCG 431
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
Sbjct 340 TCCAACCTTCAACCACAAGCAACTCTACTCTCAGCTCATCAAGCTCCTCACTTTCGACAG 399
Query 432 CCTCTTCAGTTTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 491
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTTCTTCAGTCTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 459
Query 492 ACCAAGAGAATTCACATGTTGCTCGAAT-CAATTCCTTACGAGAAGCTTCTCTATCTATG 550
||||||||||||| |||||||||||||| || ||| |||||||||||||||||||| |||
Sbjct 460 ACCAAGAGAATTCTCATGTTGCTCGAATTCA-TTCTTTACGAGAAGCTTCTCTATCAATG 518
Query 551 AAAACCACAAAACCGAGATATCCTAGCCGGTTTGATTCTCCGGTTATACCA-AGCCGGAA 609
||||||||||||||| |||||||||||||||| |||||||||||| ||||| | |||| |
Sbjct 519 AAAACCACAAAACCGGGATATCCTAGCCGGTTCGATTCTCCGGTTTTACCATA-CCGGTA 577
Query 610 TTCAACAACACCAAACAGAGCAAATGAAGATTCTAAAAGAGGATCAAATTGTTCTAAGAG 669
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 578 TTCAACAACACCAAACAGAGCAAATGAAGATCCGAAAAGAGGACCAAATTGTTCTAAGAG 637
Query 670 AACTCGAGAGCTATCACCAAACCATCGTTCATTGACACGACAAAAGAGCTTTCGTCAAGA 729
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 638 AACTCGAGAGCCATCACCAAACCATCGTGCATTGACACGACAAAAGAGTTTTCGTCAAGA 697
Query 730 TCAAGAAAGAGTTGTTATCTCTTCTTCATCAAACTCCTTAACCAAGGGAAAGTACTTGAA 789
||||||||||||| |||| || ||||||||||| || |||||||||||||||||||| ||
Sbjct 698 TCAAGAAAGAGTTATTATGTCCTCTTCATCAAATTCTTTAACCAAGGGAAAGTACTTCAA 757
Query 790 ATCTCCATCTCCAAGCAGAAGATATGAGGGAAATTTCTTGAAATCACCATCTCCAAGCCG 849
||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 758 ATCGCCATCTCCAAGCAGGAGATATGAGGGAAATTTCTTGAAATCTCCATCTCCAAGCAG 817
Query 850 GAGATTTGGTGTAGCCG-CGGCT-AGTTTGACGGT-----C--TCT-T-CTTGTGTAAGG 898
|||||||||| | | || || || | ||||||||| | ||| | |||||||||||
Sbjct 818 GAGATTTGGTAT-GACGGCGACTGA-TTTGACGGTAAAATCAGTCTCTTCTTGTGTAAGG 875
Query 899 AAAGATAGTTTAGATCTGTCTGGTCGCAAGATTTGTCATATGAGCAACAGATCAGAGCCT 958
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 876 AAAGATAGTTTAGATCTGTCTGGTCGCAAGACTTGTCAGAAGAGCAACAGATCAGAGCCT 935
Query 959 CGAATACATCGCATAAGTTCTAAGATCGACCAAACAATTATCAGAGAAGTAATCACAAAA 1018
|| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 936 CGGATTCATCGCATAAGTTCTAAGATCGACGAAAAAATTATCAGAGAAGTAATCACAAAC 995
Query 1019 GATAGGGAACCAGTGGTTCCAATATTTGAAGAAGTTGGCAATCCTTTGATTGATTTGGAT 1078
||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 996 CATAAGGAACCAGTGGTTCCAATATTCGAAGAAGTCGGCAATCCTCTGATTGATTTGGAT 1055
Query 1079 TGCTTTATCTTTCTTTAAGGAGAAACATTTGATTT 1113
|||||||||||||||||||||||| | ||| ||||
Sbjct 1056 TGCTTTATCTTTCTTTAAGGAGAAGCTTTTAATTT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5