BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21525.1

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472389 jgi|Araly1|472389|fgenesh2_kg.1__2343__AT1G21525.1         656    0.0  


> Ahg472389 jgi|Araly1|472389|fgenesh2_kg.1__2343__AT1G21525.1
Length=462

 Score =  656 bits (355),  Expect = 0.0
 Identities = 416/445 (93%), Gaps = 6/445 (1%)
 Strand=Plus/Plus

Query  40   acacatacacttatc-a-acataaacaGCCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA  97
            ||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  22   ACACATACACACATCAACACATAAACAACCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA  81

Query  98   GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGTAGCGAGTGTGATTCCCGTTACGAGGA  157
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  82   GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGCAGCGAGTGTGATTCCCGTTAAGAGGA  141

Query  158  AGCTGGTGAAGACTATGGCCGCGAAAGCCATTATCTCTGCTCTCACGCCATCCGGTTGTG  217
            |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct  142  AGCTGGTGAAGACTATGGCCGCTAAAGCCATTATCTCTGCCCTCACTCCATCCGGTTGTG  201

Query  218  GCCGGCACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA  277
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  GCCGGAACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA  261

Query  278  CTCATCGTTGATCGGCCATTTTCTTGGGATTGAAGATATATATGCCGTCATGATCGTTTA  337
            |||||||||||||||  ||||||||||| |||||||||||||||||||| | ||||||| 
Sbjct  262  CTCATCGTTGATCGGATATTTTCTTGGGGTTGAAGATATATATGCCGTCGTTATCGTTTT  321

Query  338  TGGGttttctttttatgttttttttttATATATCTAAATGTTGGTGTTCTCGTTGATAAT  397
            |||||||||||||| | |||| |||| |||||| ||||||||||||||||||||| ||||
Sbjct  322  TGGGTTTTCTTTTTTTATTTTATTTTGATATATTTAAATGTTGGTGTTCTCGTTG-TAAT  380

Query  398  TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTCTTAAAGATTTAAATGTTTTC  457
            ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct  381  TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTTTTAAGGATTTAAATGTTT-C  439

Query  458  TCTACTATTCAGTTTCCGGTAGGGG  482
            |  ||| ||||||||||||||||||
Sbjct  440  T--ACTGTTCAGTTTCCGGTAGGGG  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20565862471


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5