BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21525.1 Length=563 Score E Sequences producing significant alignments: (Bits) Value Ahg472389 jgi|Araly1|472389|fgenesh2_kg.1__2343__AT1G21525.1 656 0.0 > Ahg472389 jgi|Araly1|472389|fgenesh2_kg.1__2343__AT1G21525.1 Length=462 Score = 656 bits (355), Expect = 0.0 Identities = 416/445 (93%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 40 acacatacacttatc-a-acataaacaGCCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA 97 |||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 22 ACACATACACACATCAACACATAAACAACCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA 81 Query 98 GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGTAGCGAGTGTGATTCCCGTTACGAGGA 157 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 82 GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGCAGCGAGTGTGATTCCCGTTAAGAGGA 141 Query 158 AGCTGGTGAAGACTATGGCCGCGAAAGCCATTATCTCTGCTCTCACGCCATCCGGTTGTG 217 |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 142 AGCTGGTGAAGACTATGGCCGCTAAAGCCATTATCTCTGCCCTCACTCCATCCGGTTGTG 201 Query 218 GCCGGCACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA 277 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 GCCGGAACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA 261 Query 278 CTCATCGTTGATCGGCCATTTTCTTGGGATTGAAGATATATATGCCGTCATGATCGTTTA 337 ||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||| Sbjct 262 CTCATCGTTGATCGGATATTTTCTTGGGGTTGAAGATATATATGCCGTCGTTATCGTTTT 321 Query 338 TGGGttttctttttatgttttttttttATATATCTAAATGTTGGTGTTCTCGTTGATAAT 397 |||||||||||||| | |||| |||| |||||| ||||||||||||||||||||| |||| Sbjct 322 TGGGTTTTCTTTTTTTATTTTATTTTGATATATTTAAATGTTGGTGTTCTCGTTG-TAAT 380 Query 398 TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTCTTAAAGATTTAAATGTTTTC 457 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | Sbjct 381 TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTTTTAAGGATTTAAATGTTT-C 439 Query 458 TCTACTATTCAGTTTCCGGTAGGGG 482 | ||| |||||||||||||||||| Sbjct 440 T--ACTGTTCAGTTTCCGGTAGGGG 462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20565862471 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5