BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21540.1
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921129 jgi|Araly1|921129|scaffold_102410.1 2625 0.0
Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 148 1e-34
> Ahg921129 jgi|Araly1|921129|scaffold_102410.1
Length=1694
Score = 2625 bits (1421), Expect = 0.0
Identities = 1605/1696 (95%), Gaps = 4/1696 (0%)
Strand=Plus/Plus
Query 25 ACATTAACAAAAATCAAAGTATGGAACTCTTACTTCCACACCCTTCGAACTCAACACCTC 84
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACATAAACAAGAATCAAAGTATGGAACTCTTACTTCCACACCCTTCGAACTCAACACCTC 60
Query 85 TCACCGTCCTCGGCTTCTTAGACCGAGCCGCCTCTGTCTACGGCGACTGTCCGTCCATCC 144
||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||
Sbjct 61 TCACCGTCCTCGGCTTCTTGGATCGAGCCGCCTCCGTCTATGGCGACTGTCCGTCCATCC 120
Query 145 TCCACACCACTAACACCGTCCACACTTGGTCCGAAACCCACAACCGCTGTCTTCGAATCG 204
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCACGCCACTAACACCGTCCACACTTGGTCCGAAACCCACAACCGCTGTCTTCGAATCG 180
Query 205 CCTCGGCTCTCACTTCTTCCTCTCTCGGCATAAACCGAGGCCAAGTTGTCTCCGTCGTAG 264
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 181 CCTCGGCTCTCACTTCATCCTCTCTCGGCATAAACCAAGGCCAAGTCATCTCCGTCGTAG 240
Query 265 GTCCCAACGTCCCGTCCGTCTACGAGCTTCAGTTTGCTGTCCCAATGTCCGGAGCCATCT 324
| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCCAACGTCCCGTCTGTTTACGAACTTCAGTTTGCTGTCCCAATGTCCGGAGCCATCT 300
Query 325 TAAACAACATCAACCCTCGTTTGGACGCACATGCACTCTCTGTCCTCCTGCGTCACAGTG 384
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TAAACAACATCAACCCTCGCTTGGACGCACATGCACTCTCTGTCCTCCTGCGTCATAGTG 360
Query 385 AATCTAAGCTCGTTTTCGTCGATCCCAATTCAATCTCCGTAGTCCTCGAAGCAGTCTCGT 444
|||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 361 AATCTAAGCTCGTTTTTGTCGATCCCAACTCAATCTCCTTAGTCCTTGAAGCAGTCTCGT 420
Query 445 TCATGAGG-CAAAACGAGAAACCTCACCTTGTCCTCCTAGACGACGACCAAGAGGACGGT 503
| || || ||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 TTTTG-GGACAACACGAGAAACCTCACCTTGTCCTCCTCGAAGACGACCAAGAGGACGGT 479
Query 504 TCTTTGTCTCCTTCGGCCGCATCAGATTTTCTTGACACATACCAAGGAGTTATGGAGAGA 563
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TCTTCGTCTGCTTCGGCCGCATCAGATTTTCTTGACACATACCAAGGAATTATGGAGAGA 539
Query 564 GGAGATTCAAGATTCAAGTGGATCCGTCCTCAAACCGAGTGGCAGCCTATGATTCTCAAC 623
|||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GGAGATTCGAGATTCAGGTGGATCCGTCCTCAAACCGAGTGGCAGCCAATGATTCTCAAC 599
Query 624 TATACTTCTGGAACAACGTCATCTCCCAAAGGAGTAGTG-TTGAGCCACAGAGCAATTTT 682
|| ||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||
Sbjct 600 TACACTTCTGGAACAACGTCGTCTCCCAAAGGAGTTGTGCTT-AGCCACAGAGCAATTTT 658
Query 683 CATGCTAACCGTAAGCTCATTGCTTGACTGGCATTTTCCGAACAGGCCGGTTTACTTGTG 742
|||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 659 CATGCTAACCGTTAGCTCATTGCTTGATTGGCATTTTCCGAACCGGCCGGTTTACTTGTG 718
Query 743 GACTCTACCAATGTTCCACGCCAATGGTTGGGGGTATACATGGGGCACTGCGGCGGTTGG 802
|||||||||||||||||||||||| |||||||| || || ||||||||||| ||||||||
Sbjct 719 GACTCTACCAATGTTCCACGCCAACGGTTGGGGATACACTTGGGGCACTGCAGCGGTTGG 778
Query 803 AGCCACCAACGTCTGCACCCGTAGAGTCGACGCGCCGACTATCTATGACTTGATCGATAA 862
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 779 AGCCACCAACGTCTGCACGCGTAGAGTCGATGCGCCGACTATATATGACTTGATCGATAA 838
Query 863 GCATCACGTAACTCACATGTGTGCCGCACCAATGGTTCTCAACATGCTAACCAACTACCC 922
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 839 GCATCACGTAACTCACATGTGTGCGGCACCAATGGTTCTCAACATGCTAACCAATTACCC 898
Query 923 GTCTCGTAAACCGCTAAAGAACCCGGTTCAGGTTATGACCGCCGGAGCTCCACCTCCAGC 982
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 899 GTCTCGTAAACCGCTAAAGAACCCGGTTCAGGTTATGACCGCTGGAGCTCCACCTCCGGC 958
Query 983 AGCCATCATCTCAAGAGCAGAAACCCTAGGTTTCAACGTCGGTCATGGGTACGGTTTAAC 1042
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGCCATCATCTCCAGAGCAGAAACCCTAGGTTTCAACGTCGGTCATGGGTACGGTTTAAC 1018
Query 1043 GGAAACCGGAGGCCCGGTTGTGTCATGTGCTTGGAAGGCTGAGTGGGATCATCTTGATCC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGAAACCGGAGGCCCGGTTGTGTCATGTGCTTGGAAGGCTGAGTGGGATCATCTTGATCC 1078
Query 1103 ATTGGAAAGAGCAAGACTGAAATCAAGACAAGGAGTAAGAACCATCGGATTCGCGGAAGT 1162
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 ATTGGAGAGAGCTAGACTGAAATCAAGACAAGGAGTAAGAACCATCGGATTCGCGGATGT 1138
Query 1163 TGATGTTAGGGACCCGAGAACCGGGAAGAGTGTGGAACACGACGGTGTTTCCGTTGGAGA 1222
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1139 CGATGTTAGGGACCCGAGAACCGGGAAGAGTGTGGAACACGACGGAGTTTCTGTAGGAGA 1198
Query 1223 GATCGTTTTAAAAGGCGGTTCGGTTATGCTTGGTTACTACAAAGACCCTGAAGGAACCGC 1282
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1199 GATCGTTTTAAAAGGTGGGTCGGTTATGCTTGGTTACTACAAAGACCCGGAAGGAACAGC 1258
Query 1283 AGCGTGTATGAGAGAGGACGGATGGTTCTACAGCGGAGACGTAGGAGTTATACATGAAGA 1342
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1259 GGCGTGTATGAGAGAGGACGGATGGTTCTACAGCGGAGACGTAGGGGTTATACATAAAGA 1318
Query 1343 CGGTTACTTGGAAGTTAAAGACCGGTCAAAGGATGTGATCATATGCGGAGGAGAGAACAT 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGGTTACTTGGAAGTTAAAGACCGGTCAAAGGATGTGATCATATGCGGAGGAGAGAACAT 1378
Query 1403 AAGTAGTGCCGAGGTTGAGACGGTTCTGTATACAAATCCAGTAGTTAAAGAAGCCGCGGT 1462
||||||||| ||||||||||||||||||||||||||||| || || || ||||| |||||
Sbjct 1379 AAGTAGTGCTGAGGTTGAGACGGTTCTGTATACAAATCCGGTGGTGAAGGAAGCTGCGGT 1438
Query 1463 GGTGGCTAAACCGGATAAGATGTGGGGAGAGACACCGTGTGCTTTTGTGAGCTTGAAGTA 1522
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1439 GGTGGCTAAACCGGATAAAATGTGGGGAGAGACGCCGTGTGCTTTTGTGAGCTTGAAGTA 1498
Query 1523 TGATAGTAATGGTAATGGGTTGGTGACTGAGAGGGAAATAAGGGAGTTTTGTAAGACGAG 1582
||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1499 TGATAATAATGGTAATGGTTTGGTGACAGAGAGGGAAATAAGGGAGTTTTGTAAGACAAA 1558
Query 1583 GTTACCTAAGTATATGGTTCCAAGGAAAGTAATTTTTCAGGAGGAGCTTCCAAAGACTTC 1642
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1559 GTTACCTAAGTATATGGTTCCGAGGAAAGTGATTTTTCAGGAGGAGCTTCCAAAGACTTC 1618
Query 1643 TACTGGAAAGATACAGAAGTTTCTTCTAAGACAAATGGCTAAGTCTCTGCCTTAAAGATT 1702
||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1619 TACGGGAAAGATCCAAAAGTTTCTTCTTAGACAAATGGCTAAGTCCCTGCCTTAAAGATT 1678
Query 1703 CGCTTGAGTTATTGAG 1718
| ||| ||||||||||
Sbjct 1679 CACTTAAGTTATTGAG 1694
> Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1
Length=1596
Score = 148 bits (80), Expect = 1e-34
Identities = 112/128 (88%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1560 ATAAGGGAGTTTTGTAAGACGAGGTTACCTAAGTATATGGTTCCAAGGAAAGTAATTTTT 1619
||||||||||||||||| || | | | || |||||||||||||||||||| || ||||
Sbjct 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518
Query 1620 CAGGAGGAGCTTCCAAAGACTTCTACTGGAAAGATACAGAAGTTTCTTCTAAGACAAATG 1679
| ||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578
Query 1680 GCTAAGTC 1687
||||||||
Sbjct 1579 GCTAAGTC 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69133794675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5