BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21550.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472391 jgi|Araly1|472391|fgenesh2_kg.1__2345__AT1G21550.1 715 0.0
> Ahg472391 jgi|Araly1|472391|fgenesh2_kg.1__2345__AT1G21550.1
Length=603
Score = 715 bits (387), Expect = 0.0
Identities = 498/548 (91%), Gaps = 22/548 (4%)
Strand=Plus/Plus
Query 72 AAACTACCCTTCTCTGATCAAATGGATTGTTCATTCATAA-CTACAAACGATCTCCGAAG 130
|||||||||||||||||||||||||||||||||||||||| | | | ||||||||| |||
Sbjct 1 AAACTACCCTTCTCTGATCAAATGGATTGTTCATTCATAAGC-AGAGACGATCTCCAAAG 59
Query 131 AATGTTCAAGACGCTCGACAAGAACCAAGACGGGCTTGTGACCCTCGACGAGCTCCTTTG 190
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 AATGTTCAAGAAGCTCGACAAGAACCAAGACGGGCTTGTGACCCTCGACGAGCTCCACTG 119
Query 191 GATTCTTGATAAACTCGGTTGGGCCGAACACACTCCCGATGAGCTTGAACTGATCGTTGG 250
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 GATTCTTGAGAAACTCGGTTGGCCCGAACACACTCCCGATGAGCTTGAACTGATCGTTGG 179
Query 251 TAAACAGAGCCTCGATTTAGACGAGTTCCTTCGGTTCTACTACGACGCTGTTTTAGATAG 310
||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 180 AAAACAGAGCCTCGATATAGACGAGTTTCTTCGGTTCTACAACGACGCCGTTTTAGATAG 239
Query 311 CAAAGGATCTAAGAAGAATATTGATGTTGTTGCTGATAATGATGAAGCGATTGCGAGGGC 370
||||||| | |||| | | || | || |||||||||||||||||||||
Sbjct 240 CAAAGGA---ACGAAG-A-A--GA--------C---TACTGATGAAGCGATTGCGAGGGC 281
Query 371 GTTTAATGTGTTCGATGTGAACGGAGATGGTTATATTTCAGCGGAGGAGCTTCGTGATGT 430
||||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 282 GTTTAGTGTGTTTGATGTGAACGGAGATGGTTATATTTCTGCTGAGGAGCTTCGTGATGT 341
Query 431 GTTGGAACGGCTAGGGTTTGAGGAGGAGGCAAAGGCTTGGGATTGTGGGAGAATGATTCG 490
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||
Sbjct 342 GTTGGAACGGCTAGGGTTCGAGGAGGAGGCAAGGGCTTGGGATTGTGGGAGAATGATACG 401
Query 491 AGTTCATGACAAGAATCTTGATGGTTTTGTTGACTTTGAAGAATTCAAGAACATGATCTT 550
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 402 AGTTCATGACAAGAATCTTGATGGTTTCGTTGACTTTGAAGAATTCAAGAACATGATCTT 461
Query 551 ACATGTCTAATGATGGTGATACACATGTGACATGTGTGTGTA--GTCCTTTTACATGTTT 608
||||||||||||||| | |||||||||| ||||||||| ||| |||| |||||||||||
Sbjct 462 ACATGTCTAATGATGATAATACACATGTAACATGTGTGCGTATAGTCCATTTACATGTTT 521
Query 609 GATGTGTT 616
||||||||
Sbjct 522 GATGTGTT 529
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 716 TTTGGTAATGAAATGGCTCTTCTCACTAA 744
|||||||||||||||||||||||||||||
Sbjct 575 TTTGGTAATGAAATGGCTCTTCTCACTAA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5