BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21560.2
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921132 jgi|Araly1|921132|scaffold_102413.1 1099 0.0
> Ahg921132 jgi|Araly1|921132|scaffold_102413.1
Length=1225
Score = 1099 bits (595), Expect = 0.0
Identities = 702/754 (93%), Gaps = 5/754 (1%)
Strand=Plus/Plus
Query 684 AAGCCGGTTTCAAATTAAGGCGAAGAGAGAGTCTTGTGAGTCAGAAGAGTGTTGAAGCAA 743
|||| ||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 475 AAGCGGGTTTCAGATTAAGGCGAAGAGAGAGTCCTGTGACTGAGAAGAGTGTTGAAGCAA 534
Query 744 TGCTTATTACAAGTCATGTGAGAAGAAACTCCCAACACAATAATGGCGACGCTAGCGAGA 803
||||||||||||||||||||| |||||||| | || || ||| | ||| ||||||||||
Sbjct 535 TGCTTATTACAAGTCATGTGAAAAGAAACT-CGAA-AC-ATAGTTTCGATGCTAGCGAGA 591
Query 804 AGGAGAATTTTG-AGGATGACATTGTATTGGATGAGGTTTACAGATCTTATCTCAAACGG 862
||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||| | ||
Sbjct 592 AGGAGAA-TTTGAAGGATCTCATGGTATTGGATGAGGGTTACAGATCTTATCTCACATGG 650
Query 863 TTAGTGGAAAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGATAAAAGTAAAGTGT 922
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 651 TTAGTGGAGAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGAGACAAGTAAAGTGT 710
Query 923 GAGGAGGATCATACAGTGTCTTTGTCTGATTCTGATTCTGATATTATTGTGGTTGGAGAT 982
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 711 GAGGAGGATTATACAGTGTCTTTGTCCGATTCTGATTCTGATATTATTGTGGTTGGAGAT 770
Query 983 TGTCCGTTTCTGGAAGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAAAGTGATT 1042
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 771 CGTCCGTTTCTGGGTGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAACGTGATT 830
Query 1043 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAGGGAGATAATGAAT 1102
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 831 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAAGGAGATAATGAAT 890
Query 1103 GTTCTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAAGGAAGCATCAGTG 1162
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 891 GTTTTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAATGAAGCATCGGTG 950
Query 1163 CATGGAGTGTCATCCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1222
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CGTAGAGTGTCAAGCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1010
Query 1223 AACAAAAAGAAACCTTCATATCTCGATAGGTATCCAGACTTCAAAAAGCAGTACCTTGAC 1282
|| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1011 AATAAAAAGACACCTTCATATCTCGATGGGTATCCAGACTTCAAAAAGCAGTACCTTGAA 1070
Query 1283 TCTTTGCGTGAAAAGGATGAGCGTAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1342
||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCTTTACGTGAAGATGATGAGCATAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1130
Query 1343 ATAACGAATGTGGTTCGTGATGATGCATTCAAACCGTGGCTCGATCAAGAATGTTTGAAG 1402
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1131 TTAACGAATGTGGTACGTGATGATGCATTCAAACCATGGCTCGATCAAGAATGTTTGAAG 1190
Query 1403 ATCAGATGTGTCTGACAAAAGAGTATCAGCACTT 1436
||||||||| ||||||||||| ||||||||||||
Sbjct 1191 ATCAGATGTTTCTGACAAAAGGGTATCAGCACTT 1224
Score = 505 bits (273), Expect = 5e-142
Identities = 413/473 (87%), Gaps = 39/473 (8%)
Strand=Plus/Plus
Query 215 AAGATGAGAACTTTGATGAATTCTGCTGCTACAATGAGAGCTGTGAAGAAGGAGTTTATT 274
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 18 AAGATGAGAAATATGATGAATTCTGCTGCTGCAATGAGAGCTGTGAAGAAGGAGTTTATT 77
Query 275 GTAATAGACTTAGATGCTGATAAAGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 334
|| || |||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 78 GTGATGGACTTAGATG--G-TAATGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 134
Query 335 TATATGATGGATGCTG-GCAA---AA--CT---A-A--T-C---C-----T--TCC---- 367
|||||||||||||||| |||| || || | | | | | | |||
Sbjct 135 TATATGATGGATGCTGAGCAATTTAATTCTTCTACAGATTCTGGCAAAACTAATCCTTCC 194
Query 368 AACATCCAACAGGTTGTTTCTGCTGTTGCTTCtgatgatgatggtgatgatgatgatgaC 427
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 195 AACATGCAACAGATTGTTTCTGCTGTTGCTTCTGATGATGATGATGATGATGATGATGAT 254
Query 428 TGGGGTACCAAAATGGATTATCAGTATATAAAGTTGTTGGATAGTTTCAGAGAAGATGGA 487
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 255 TGGGGTACCAAAATTGATTATCAGTATATTAAGTTGTTGGATAGTTTCAGAGAAGATGGA 314
Query 488 AGTTTAAATCTGAGTGACAATCCACTAAGGTCTATTAGGTATGAAGTAGATAATGGTGGA 547
| || ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 315 ACTTCAAATCTGAGTGACAATCCACTCAGGTCTATCAGGTATGAAGTAGATAATGGAGGA 374
Query 548 TATGACAAGCGGGAGTTTAAAGCAGTGTTTACAAATAAGCGGAGTAGAGAAGATCGAAAC 607
|| ||||||||||| ||||||||| | | |||||||||||||||||||||||||
Sbjct 375 TACGACAAGCGGGAATTTAAAGCA------A-A--TAAGCGGAGTAGAGAAGATCGAAAC 425
Query 608 ACTATTCGTGTAACCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 660
||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACTATTCGTGTGAGCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5