BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21590.1
Length=2860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472395 jgi|Araly1|472395|fgenesh2_kg.1__2349__AT1G21590.1 3795 0.0
> Ahg472395 jgi|Araly1|472395|fgenesh2_kg.1__2349__AT1G21590.1
Length=2784
Score = 3795 bits (2055), Expect = 0.0
Identities = 2388/2545 (94%), Gaps = 38/2545 (1%)
Strand=Plus/Plus
Query 9 CTCCTCCATTCTTACTCTTCTCTCTTTCTCAGAAGCTGCAAAACCAGAGAGTG-A--GAG 65
|||||| |||||||||||||||||| ||||||||||||||||||||||||| | | |||
Sbjct 1 CTCCTCTATTCTTACTCTTCTCTCTCTCTCAGAAGCTGCAAAACCAGAGAGCGAAGGGAG 60
Query 66 AGAATAG-AGATTCACTTTTGTGAGCGTTGCGATGATTTTGTGCCTCGTGGAATCATCAC 124
||||||| |||||| |||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 61 AGAATAGCAGATTCTCTTTTGTGAGCGTTGC-ATGATTTTGCGTCTCGTGGAATCATCAC 119
Query 125 ACTACAACGTATTCACCTGAAATTCAGACAAAACAGTTTGAGGAAACTGGGAAGTGATAA 184
||||||||||||||||||||||||||||||||||| ||| | | || || ||
Sbjct 120 ACTACAACGTATTCACCTGAAATTCAGACAAAACA-TTT--------T-TG-AG-GA-AA 166
Query 185 GATAAGAGAGTGATAGAGAGAGAGATGACGGAAAACGGCGTCGTTACAGGAGGAGGCCAT 244
| | || | | || |||||||||||||||||||||||||| ||||||||||
Sbjct 167 -CT--G-GA--G--A-AGTGAGAGATGACGGAAAACGGCGTCGTTCCAGGAGGAGGAGGC 217
Query 245 ACTGTTATGGTGGGCGTAAAGTTCGATGAGTCGAGCAATGAGCTACTTGATTGGGCTTTG 304
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 218 ACTGTTATGGTGGGCGTGAAGTTCGATGAGTCGAGCAATGAGCTGCTTGATTGGGCTTTG 277
Query 305 GTTAAGGTTGCTGAACCGGGTGATACTGTAATCGCTCTTCATGTACTCGGCAATGAGATC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GTTAAGGTTGCTGAACCGGGTGATACTGTAATCGCTCTTCATGTACTCGGCAATGAGATC 337
Query 365 GTTGACCGAGCAGACAACTCTTCTC-TCGTCTCCATTGTTAAAAACTTTGATTCTGTTCT 423
||||| ||| ||||||||||||| | || ||||| |||||||||||||||| ||||||||
Sbjct 338 GTTGATCGAACAGACAACTCTTCGCTTC-TCTCCCTTGTTAAAAACTTTGACTCTGTTCT 396
Query 424 TGAAGTTTATGAAGGTTTCTGCAAATTGAAACAGTTGGAATTGAAGCTAAAATTATCCCG 483
| |||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 397 TCAAGTCTATGAAGGTTTCTGCAAATTGAAACAGGTCGAATTGAAGCTGAAATTATCCCG 456
Query 484 GGGTTCTTCTACT-C--GAAAGATTCTAGTTAAAGAAGCAAAAATGTGTTCTGCGTCCAA 540
||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 457 GGGTTCTTCTACTACTAGAAAGATTCTAGTTAGAGAAGCAAAATTGTGTTCTGCGTCCAA 516
Query 541 AGTTGTAGTTGGGATCTCCAGACGTTTCCATACAATTCATTCATCTGTCTCCGTGGCTAA 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 517 AGTTGTAGTTGGGATCTCCAGACGTTTCCATACAATTCATTCATCTGTTTCCGTGGCTAA 576
Query 601 GTACTTAGCTAGGAAAGTAGCAAAAGATTGCTGGGTTCTGGCTGTTGACAATGGAAAAGT 660
||||||||| ||||||||| |||||||||||| ||||||||| |||||||| || |||||
Sbjct 577 GTACTTAGCCAGGAAAGTATCAAAAGATTGCTTGGTTCTGGCCGTTGACAACGGGAAAGT 636
Query 661 CATGTTTCAGAAAGATGGTTCCTCATCGATCATTCATCACTCTAAAGGTAAAAGTGATGC 720
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 637 CATATTTCAGAAAGATGGTTCCTCATCGATCATTCATCATTCTAAAGGTAAAAGCGATGC 696
Query 721 TCGTAGGAACACTTTGTCTAGTTTCTTTCAGATGCCTGTCACATTGAGAAAGAATACCAA 780
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TCGTAGGAATACTTTGTCTAGTTTCTTTCAGATGCCTGTCACATTGAGAAAGAATACCAA 756
Query 781 AGTAGTAAACCATTCTGAGGTGGAAGAGGAAGAGGCAGAGGAAGATCATTCCAATGGTCA 840
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 757 AGTAGTAAACCATTCTGAGGTGGAAGAGGAAGAGGCGGAGGAGGATCATTCCAATGGCCA 816
Query 841 GAGTCTTCGGCGGTCTTTAGTGTATGCATGCCTTGGGAATTGCTCGGTTCGTGATATGAA 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GAGTCTACGGCGGTCTTTAGTGTATGCATGCCTTGGGAATTGCTCGGTTCGTGATATGAA 876
Query 901 TTCCT-TGCCTACGCCTGGAAATTTATCTCGATCGTCTAGCTGTAATGGTGATCAAGATG 959
| || ||||| | |||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 877 AT-CTCTGCCTTCTCCTGGAAATTTATCTCGATCTTCTAGCTGTGGTGGTGATGAAGATG 935
Query 960 ATAATGCTGATTTGCACAAGGCAATGGCACTTGTTCCTGCAAAATTTCCAGAAGATTTGA 1019
||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 936 ATAGTGCTGATTTCCACAAGGCAATGGCACTTGTGCCCGCAAAATTTCCAGAAGATTTAA 995
Query 1020 CCCCATTCATTACAATGCTGGTAAAAGAACTGCCTGAATTTAGACCAGGTTGGCCTTTGC 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 996 CCCCATTCATTACAATGCTGGTAAAGGAACTGCCTGAATTTAGACCAGGTTGGCCTTTGC 1055
Query 1080 TTTGTCGTGTAGCTTCTTCAGATGTATTAGCTTCTGCTCCGAGAAGTTCTTCGTTCCGAA 1139
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1056 TTTGTCGTGTAGCTTCTTCAGATGTATTAGCTTCTTCTCCGCGAAGTTCTTCGTTCAGAA 1115
Query 1140 AGATACCAGTTGTGCAGTGGGTGCTGAAGCTGCCCGCTAGGACCAATTCTGTTGTTGGAA 1199
||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1116 AGATACCAGTTGTTCAGTGGGTGCTGAAGCTGCCCTCTAGGACCAGTTCTGTTGTTGGAA 1175
Query 1200 GCTCAGACACAAAGCAGATTGGTTTTGATTCTTCTGAATCTGAAGAAAATGATAAGTTGT 1259
| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 1176 GTTCAGACACAAAGCAGATTGGTTCTGATTCTTATGAATCTGAAGATTATGATAAGTTGT 1235
Query 1260 CTAGCTCAAACGTTGAAAGGCAAGCAATTGTTCCTGATGAATCTATGATCGTGAAATGTT 1319
|||||||||||| |||||| | |||||||||||||||||| ||||||||| ||||| |||
Sbjct 1236 CTAGCTCAAACGCTGAAAGCCGAGCAATTGTTCCTGATGATTCTATGATCATGAAAAGTT 1295
Query 1320 CTCTTGATCATAGCTCAGGTAGATTTCCAGAGAATGTAGAGGGTCTTCAGGCAAGGATCT 1379
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1296 CTCTTGATCATAGCTCAGGTAGATTTCCAGAGAATGTAGAGGGCCTTCAGGCAAGGATCT 1355
Query 1380 CCACATCTTGCCAGTTTTTTACGTATAAGGAACTTGTGTCGGTGACATCCAATTTCTGTG 1439
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1356 CCACTTCTTGCCAGTTTTTTAAGTACAAGGAACTTGTGTCGGTGACATCCAATTTCTGTG 1415
Query 1440 CTGATAATTTCATCGGAAAAGGAGGCAGCAGCCGGGTTTTTAGAGGTTATCTGCCAAATG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1416 CTGATAATTTCATCGGAAAAGGAGGCAGCAGCCGGGTTTTTAGAGGTTATCTGCCCAATG 1475
Query 1500 GAAGAGAGGTTGCAGTGAAAATTCTCAAACGAACCGAATGTGTCTTGAAGGATTTTGTGG 1559
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1476 GAAGAGAGGTTGCAGTGAAAATTCTCAAACAAACCGAGTGTGTCTTGAAGGATTTTGTGG 1535
Query 1560 CAGAGATTGACATTATCACAACCTTACACCATAAGAACGTTATTTCCCTTTTAGGTTATT 1619
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1536 CAGAGATTGACATTATCACAACCTTGCACCATAAGAACGTTATTTCCCTTTTAGGTTATT 1595
Query 1620 GCTTTGAAAACAATAACCTGTTACTAGTATATAATTATCTCTCAAGAGGAAGCCTTGAAG 1679
||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||
Sbjct 1596 GCTTTGAAAACAATAACTTGTTACTGGTGTACAATTATCTCTCAAGAGGAAGCCTTGAAG 1655
Query 1680 AGAATCTTCACGGCAACAAAAAAGACCTGGTTGCATTTCGTTGGAACGAGAGATATAAGG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 AGAATCTTCACGGCAACAAAAAAGACCTGGTTGCATTTCGTTGGAACGAGAGATATAAGG 1715
Query 1740 TGGCCGTGGGAATAGCTGAAGCGTTGGACTATCTGCATAAC-GATGCTCCACAACCTGTT 1798
||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 1716 TGGCCGTGGGAATAGCTGAGGCGTTGGACTATCTGCATAACAG-TGCTCCACAACCTGTC 1774
Query 1799 ATTCACAGAGATGTTAAGTCATCTAACATATTATTGTCTGATGATTTTGAACCACAACTT 1858
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1775 ATTCACAGAGATGTTAAGTCATCAAACATATTATTGTCTGATGATTTTGAGGCACAACTT 1834
Query 1859 TCTGACTTTGGGCTTGCAAAGTGGGCGTCGGAATCCACAACTCAGATAATCTGCTCCGAT 1918
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 1835 TCTGATTTTGGGCTTGCAAAGTGGGCGTCAGAATCCACAACTCAAATAATATGCTCTGAT 1894
Query 1919 GTCGCAGGCACCTTTGGCTACTTAGCTCCAGAGTACTTTATGTATGGTAAGATGAACAAT 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 GTCGCAGGCACCTTTGGCTACTTAGCTCCAGAGTACTTTATGTATGGTAAGATGAACAAT 1954
Query 1979 AAGATAGATGTCTATGCTTACGGCGTTGTACTCCTCGAACTTCTTTCTGGAAGAAAACCG 2038
||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1955 AAGATAGATGTCTATGCATACGGGGTTGTACTCCTCGAGCTTATTTCTGGAAGAAAACCG 2014
Query 2039 GTTAATAGCGAATCTCCAAAGGCTCAAGACAGTCTTGTTATGTGGGCGAAGCCAATTCTG 2098
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 ATTAATAGCGAATCTCCAAAGGCTCAAGACAGTCTTGTTATGTGGGCGAAGCCAATTCTG 2074
Query 2099 GATGATAAAGAATATTCACAGCTATTGGACTCGAGTTTGCAAGATGACAACAATAGTGAC 2158
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 2075 GATGATAAAGAATATTTACAGCTATTGGACTCTAGTTTGCAAGATGACAACAATGGCGAC 2134
Query 2159 CAGATGGAGAAGATGGCGTTAGCAGCCACTCTTTGTATAAGACATAACCCTCAAACTAGG 2218
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2135 CAGATGGAGAGGATGGCGTTAGCAGCCACTCTTTGTATAAGACATAACCCTCAATCTAGG 2194
Query 2219 CCAACGATGGGAATGGTCTTAGAGCTTCTTAAAGGTGACGTAGAGATGCTAAAATGGGCA 2278
||||||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||
Sbjct 2195 CCAACGATGGGAATGGTCTTAAAGCTTCTTAAAGGTGATGCAGAGATGCTAAAATTGGCA 2254
Query 2279 AAGCTACAAGTTAGTAACCCGTTAGAGGATTCAATGCTACTCAAGGACGAGAAATTGCGG 2338
||||||||||||||||||| ||||| ||||||| |||||||||||| |||||| |||||
Sbjct 2255 AAGCTACAAGTTAGTAACCATTTAGAAGATTCAAAGCTACTCAAGGATGAGAAACTGCGG 2314
Query 2339 AGGTCTAATCTGCAGTCACATCTAAACCTAGCATTCCTTGACATGGAAGATGACTCTCTT 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2315 AGGTCTAATCTGCAGTCACATCTAAACCTAGCATTCCTTGACATGGAAGATGACTCTCTT 2374
Query 2399 TCCATGGGAAGCATGGAGCAAGGCATCTCCGTGGAGGAGTATCTTAAAGGCAGGACAAGC 2458
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 TCCATGGGGAGCATGGAGCAAGGCATCTCCGTGGAGGAGTATCTTAAAGGCAGGACAAGC 2434
Query 2459 CGTTCATCAAGCTTCAACTGAGCCATTATTTTTGTTCACTACAACAAATCACAATTGCAA 2518
|||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2435 CGTTCATCGAGCTTCAACTGAGCCATT-TTTT-GTTCACTACAACAAATCACAATTGCAA 2492
Query 2519 TACTCAACAATGTGAGATGGTGaaa 2543
||||| |||||||||||||||||||
Sbjct 2493 TACTCTACAATGTGAGATGGTGAAA 2517
Score = 313 bits (169), Expect = 6e-84
Identities = 263/303 (87%), Gaps = 27/303 (9%)
Strand=Plus/Plus
Query 2562 TGTGAG-TGAGTGTAAAGTGTATATTTAAGAAAATGTGTTTCTTTTCATTGTCATGGTCT 2620
|||||| || ||| |||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 2503 TGTGAGATG-GTG-AAAGTGTATATTTAAGAAAAGGTGTTTCTTTTCATTTTCATGGCCT 2560
Query 2621 CATGGGTGGTGGATGAGAGGTGGATTTGTGTGGGTTTTATTG-CCCTCCTCCCTCCCTTG 2679
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 2561 CATGGGTGGTGGATGAGAGGTGGATTTGTG-GG-TTTTATTGGCCCTCCTCCCTCCCTTG 2618
Query 2680 GTTTAGGGGTTATAGTTATAGCGTTCAA-AGGTTTCGTGTGTTTTATGCAATGTTTTTTA 2738
|||| |||| |||| | ||||| ||||| || ||| | |||| ||||||||
Sbjct 2619 GTTTTGGGGATATAATCATAGCTTTCAATAG-TTTGGGGTGTCCTATGCAAT-------- 2669
Query 2739 CTTGGGAACATCAGAGACATGTAATTTGTATTCCTTGATCCTAAT---GGATCAAAGTGA 2795
| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2670 C-----A---TCAGAGACATGTAATTTGTATTCCTTGATCCTAATAATGGATCAAAGTGA 2721
Query 2796 ATTTTCTTGTCTTGTAATGCTCGAACGTGTCTCACTGTTATCAATAGAATAACATTATCT 2855
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2722 ATTTTCTTGTCTTGTAATGCTCGAACGTGTCTCTCTGTTATCAATAGAATAACATTATCT 2781
Query 2856 TGT 2858
|||
Sbjct 2782 TGT 2784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107947754330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5