BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21600.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472396 jgi|Araly1|472396|fgenesh2_kg.1__2350__AT1G21600.2 1624 0.0
> Ahg472396 jgi|Araly1|472396|fgenesh2_kg.1__2350__AT1G21600.2
Length=1268
Score = 1624 bits (879), Expect = 0.0
Identities = 995/1050 (95%), Gaps = 12/1050 (1%)
Strand=Plus/Plus
Query 4 TTTCCTCGAAATATCTAATCCACAGATAGATAGAACACTCTGTGAGCTTTATCCGCTTCC 63
||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1 TTT-CTCGAAATATCTAATCCACAG-T---TAGAACACTCT-TGAGCTTTATCCGCTTCC 54
Query 64 AATGGCGTCTTCCGCCGCTTCTCCTTCCTTATCTCTACTCTCATTCACCTCGAAGCCACC 123
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 55 CATGGCGTCAACCGCCGCTTCTCCTTCCTTATCTCTACTCTCATTCACCTCGAAACCACC 114
Query 124 TTATCCCTCCGGCTCTCAGCGGCTATTTGCGTCATTCAGAACGGACGGTC-TTTTCGCGC 182
| | |||||| | | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 115 GTCTTCCTCCGCCACGCAGCGGCTATTTGCGTCATTCAGAACGGACGG-CGGTTTCGCGC 173
Query 183 CTTTAACACTGAAATCCCGACGCGGCCGTGGTAT-AGTCGTTAAAGTAGATGACGTCGAT 241
|||||||||| ||||||||||||||||||||| | | ||||||||||||| |||||||||
Sbjct 174 CTTTAACACTCAAATCCCGACGCGGCCGTGGTTTCA-TCGTTAAAGTAGACGACGTCGAT 232
Query 242 GCTGATGGAGGTGGAGCGGACGAGTATGATATGGATGATGAGGAGGTAGAGGAAGTTGAC 301
||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||
Sbjct 233 GCTGATGGAGGTGGACCGGACGAGTACGACATGGATGATGAGGAAGTAGAGGAAGTTGAC 292
Query 302 AACAAGAAGGACTATGATGTCGAGTATGACCCCTTGGCCGCCGCGATAGCCGCTGCAGGC 361
||||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||
Sbjct 293 AACAAGAAGGACTATGACGTTGAGTACGACCCCTTGGCCGCAGCGATGGCGGCTGCAGGC 352
Query 362 GGTGGTGGTGATGGAGATATCGCTTTTGTTCAGAGTAAGAGTTTTATATCGACACAAGGA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 353 GGTGGTGGTGATGGAGATATCGCTTTTGTTCAGAGTAAGAGTTTTATATCGACACAGGGA 412
Query 422 TGGGATTCGGATATGGTGGTTGATTATCGGATAAACGAAGATGAGTTTCATAAACTCAGC 481
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 413 TGGGATTCGGAGATGGTGGTGGATTATCGGATAAACGAAGATGAGTTTCATAAAATCAGC 472
Query 482 TTAATGGACTGTGATTTCTTTATCAGAAAACCTCCTGATCCAGATAATGATGTTTATGAT 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 473 TTAATGGACTGTGATTTCTTTATCAGAAAACCTCCTGATCCAGATAACGATGTTTATGAT 532
Query 542 TTCAGAGAGATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTT 601
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 533 TTCAGAGAGATGTATGTAACTCCTCCTGATACAGATATTTACTCAATTCCGAGAGTTCTT 592
Query 602 GCACCGATGCCTCAAAAGTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTC 661
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCACCAATGCCTCAAAAGTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTC 652
Query 662 ACTGAACCACCTATTGATGC-CCCCAGAGATCCACTGTACAAATCTGAGAGGGAGATATC 720
|| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 653 ACCGAACCACCTATTGATGCTCCCC-GGGATCCACTGTACAAATCTGAGAGGGAGATATC 711
Query 721 CAAGGTTTTCTTGACAAAACATTACCGGAACAGAAGGACAAACGATCCAGAATTTGTGCT 780
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 CAAGGTTTTCTTGACAAAGCATTACCGGAACAGAAGGACAAACGACCCAGAATTTGTGCT 771
Query 781 AGATCTTGAAGAGATATATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGT 840
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGATCTTGAAGAGATCTATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGT 831
Query 841 TCTGGTGACAGTTCCGGGAGGAAGAAAAAGGGATAGGAAGGATGACTTGCTTGTGATACG 900
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 832 TCTGGTGACAGTTCCGGGAGGAAGAAAAAGAGATAGGAAGGATGACTTGCTCGTGATACG 891
Query 901 AGATAATGGAACCTCCTTTAAGATCATACACGTGGGTGAAAGAGATGACCCAACAACGGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGATAATGGAACCTCCTTTAAGATCATACACGTGGGTGAAAGAGATGACCCAACAACGGT 951
Query 961 AATAGAAAGAGAAGAGTGGACCAAGACTAGAGAAGACATGGAGAAACATCTCAGGAAGCT 1020
|||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 952 AATAGAGAGGGAAGAGTGGACCAAGACCCGAGAAGACATGGAGAAACATCTCAGGAAGCT 1011
Query 1021 ACGAGACTTCAGTGTCTCAAATTGGTTCTA 1050
||||||||||||||||||||||||||||||
Sbjct 1012 ACGAGACTTCAGTGTCTCAAATTGGTTCTA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5