BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21620.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335400 jgi|Araly1|335400|fgenesh1_pg.C_scaffold_1001965 544 6e-154
Ahg950670 jgi|Araly1|950670|scaffold_802557.1 248 5e-65
Ahg952436 jgi|Araly1|952436|scaffold_7100006.1 196 2e-49
Ahg950763 jgi|Araly1|950763|scaffold_802650.1 196 2e-49
> Ahg335400 jgi|Araly1|335400|fgenesh1_pg.C_scaffold_1001965
Length=1032
Score = 544 bits (294), Expect = 6e-154
Identities = 448/517 (87%), Gaps = 32/517 (6%)
Strand=Plus/Plus
Query 5 CACACCAGCTCCGTTTTGCCGCCGCAAGAGAACCCATCTCAGAAGAGTATCCGGCGGTTG 64
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 47 CACACCATCTCCGTTTTGCCGCCGCAAGAGAACCCATCTCAGAAGGGTATCCGGCGGTTG 106
Query 65 CTCTTCCTCATCCACGTTGCATCTCCGTCGCGTTTCCTCCTCCGAGATTCACACCATCTC 124
||| ||||||||||||| || |||||||| ||||||||||||| ||||||| |||||||
Sbjct 107 CTCCTCCTCATCCACGTGGCTTCTCCGTCAAGTTTCCTCCTCCGGGATTCACCCCATCTC 166
Query 125 CGTCGCCTTTAACTAATTACTCATTCTTGGCCGCATTAACTCCTCAAGAACTGGAGATGC 184
|||| ||||||||| | |||||||||| |||| |||||| | | | || | |||
Sbjct 167 CGTCACCTTTAACT-A--ACTCATTCTTCACCGCCTTAACT-C-C-A-AA----A-ATG- 213
Query 185 GTTTGCAAATTGCAATGGATGTCCAGATGATCTCGAAGTTAGACCAAAGAAAGCTTCAAA 244
| || || | | | | ||||||| ||||||||||||||| |||||||||
Sbjct 214 G-ATG----TT-C--T--A----C--ATGATCTTAAAGTTAGACCAAAGAGAGCTTCAAA 257
Query 245 CGATGGCGTCATTGCTGACATCAGATCCCGATTACTTCTTGATGATCGCAAGAAACATGA 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 258 CGATGGCGTCATTGCTGACATCAGATTCCGATTACTTCTTGATGATCGCAAGAAACAAGA 317
Query 305 ACGGCTCCAAACGCATTCAGAAACTTCTCGGAAAAACAGATGACGTGGACGCTTTATTCG 364
||||||||||||||| ||||||||||| || | |||||||||||||||| |||||||||
Sbjct 318 ACGGCTCCAAACGCA-ACAGAAACTTCTGGGGATAACAGATGACGTGGACACTTTATTCG 376
Query 365 CCGCCGCTATCTTGCGCCGCTTCCTCCACATCATCACCGACAAGTACGCGTCGTACGTGG 424
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 377 CCGCCACTATCTTGCGCCGCTTCCTCCACATCATCACCGACAAGTACGCATCGTACGTGG 436
Query 425 TGAGACGGGGGAT-GACAGTTTTCGATAAGAAGAAGAAAAAAGCAATGTACGAGCACATT 483
|||||||||||| | |||||||| |||||||||||||| ||||||| ||||||| ||||
Sbjct 437 CGAGACGGGGGATAG-CAGTTTTCAATAAGAAGAAGAAAGAAGCAATTTACGAGCGCATT 495
Query 484 CTCCACTACGCGAGCCACATAGCGCGTGATAAACACG 520
||||| |||||| ||||||||||||| |||||||
Sbjct 496 CTCCATTACGCGCTATACATAGCGCGTGACAAACACG 532
Score = 529 bits (286), Expect = 2e-149
Identities = 346/374 (93%), Gaps = 8/374 (2%)
Strand=Plus/Plus
Query 520 GCTCTTGTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAAC-GCGTGCTTAAACT 578
||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 616 GCTATTTTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAACAG-GTGCTTAAACT 674
Query 579 GAATGACTTGCGTAGCAAGAACAACATCGTCGTTAGTCTACGTGGCCACTTTGTTGATCT 638
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 675 GAATGACTTGCGTTGCAAGAACAACATCGTCGCTAGTCTACGTGGCCACTTTGTTGATCT 734
Query 639 CTCGTTTCAGAAATATGGAAGCTACGTTGTGGATGTACTTTTGGAGACGAAGGAGTCAAT 698
|||| |||||| ||||||||||||| ||||| | | |||||||||||| ||||||||||
Sbjct 735 CTCGATTCAGAGATATGGAAGCTACATTGTGAACCTGCTTTTGGAGACGGAGGAGTCAAT 794
Query 699 GGTTGTGGTGGTGGAGGAGCTTATGGAATGTGAAGGAGATATGTTGATGAGGTTGGCGAG 758
|||||||||||||||||||||| | || ||||||| || ||||||||||||| ||||
Sbjct 795 GGTTGTGGTGGTGGAGGAGCTT-T----TG-GAAGGAGGTAGGTTGATGAGGTTGACGAG 848
Query 759 GAATGAGTATGGGAATTTCTTGGTGTGCAAGGCACTGAGAGTCACGCAGAAGGAGATGGT 818
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAATGTGTATGGGAATTTCGTGGTGTGCAAGGCACTGAGAGTCACGCAGAAGGAGATGGT 908
Query 819 TAGGACTGATCTGTTTTGGGGTTTGGTGCATAAGCTCAAGCCTTTTCACAATCTCTTGCG 878
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 909 TAGGACTGATCTGTATTGGGGTTTGGTGCATAAGCTCAAGCCTTTTCACAATCCCTTGCG 968
Query 879 TTGGTCTCGTGGAA 892
| ||||||||||||
Sbjct 969 TAGGTCTCGTGGAA 982
> Ahg950670 jgi|Araly1|950670|scaffold_802557.1
Length=1017
Score = 248 bits (134), Expect = 5e-65
Identities = 322/409 (79%), Gaps = 27/409 (7%)
Strand=Plus/Plus
Query 515 AAC-ACGCTCTTGTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAACGCGTGCTT 573
||| |||||||| | |||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 575 AACAACGCTCTTTTGCTAAGCAACGATGCTTATGGGAACTTTGTGGTCCAACACGTGCTT 634
Query 574 AAACTGAA-TGACTTGCG-TAGCAAGAACAACATCG-TCGTTAGTCTACGTGGCCACTTT 630
||||| | |||||| || | ||| | ||||||| | | || |||| |||||||||
Sbjct 635 AAACT-ACGTGACTTCCGCT-GCACGCGTAACATCGCT-GATAATCTATGTGGCCACTGC 691
Query 631 GTTGATCTCTCGTTTCAGAAA-TATGGAAGCTACGTTGTGGAT-GTACTTTTGGAGACGA 688
|| || ||||||||| | ||| |||||||||||| ||||||| | ||||||||| |
Sbjct 692 GTCGAACTCTCGTTTAA-AAAGTATGGAAGCTACATTGTGGAGCGG-CTTTTGGAGGTGG 749
Query 689 AGGAGTCA--A-TGGTTGTGGTGGTGGA-GGAGCTTATGGAATGTGAAG-GAGATATGTT 743
||| ||| | ||| | ||||| | ||| ||| ||| || ||| |||| |||||
Sbjct 750 GGGACTCAGTAATGGAACTAGTGGTT-ATGGATCTTTTGGCGTGC-AAGAGAGAGATGTT 807
Query 744 GATGAGGTTGGCGAGGAATGAGTATGGGAATTTCTTGGTGTGCAAGGCACTGAGAGTCAC 803
||||||||||||||||| |||||| ||||||||| |||||| ||| |||||| || | |
Sbjct 808 GATGAGGTTGGCGAGGAGTGAGTACGGGAATTTCGTGGTGTACAACGCACTG-GATTTAA 866
Query 804 GCAGAAGGAGATGGTTA-GGACTGATCTGTTTTGGGGTTTGGTGCATAA-GCTCAAGCCT 861
| |||||| || ||| || |||||||||||| ||||||||| | || ||||| ||||
Sbjct 867 -C-GAAGGACATTCTTACGG-CTGATCTGTTTTATGGTTTGGTG-AGAAAGCTCATGCCT 922
Query 862 TTTCACAATCTCTTGCGTTGGTCTCGTGGAAAG-AACATTGCATCCATC 909
| || | ||||||||||| |||||| ||||| | || |||||| |||||
Sbjct 923 TATCGCCATCTCTTGCGTAGGTCTCCTGGAA-GCAAGATTGCAGCCATC 970
> Ahg952436 jgi|Araly1|952436|scaffold_7100006.1
Length=1027
Score = 196 bits (106), Expect = 2e-49
Identities = 247/315 (78%), Gaps = 10/315 (3%)
Strand=Plus/Plus
Query 211 ATGATCTCGAAGTTAGACCAAAGAAAGCTTCAAACGATGGCGTCATTGCTGACATCAGAT 270
|||||||| |||| |||| ||| | |||||| | |||||| || |||||||| |||||
Sbjct 201 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA- 259
Query 271 C-CCGATTACTTCTTGATGATCG-CAAGAAACATGAACGGCTCCAAACGCATTCAGAAAC 328
| ||||||||||| || ||||| | | ||||| | ||||||| | |||| | ||||| |
Sbjct 260 CTCCGATTACTTCATGGCGATCGTC-ACAAACAAGTACGGCTCGAGACGCGTGCAGAAGC 318
Query 329 TTCTCGGAAAAACAGATGACGTGGACGCTTTATTC-GCCGCCGCTATCTTGCGCCGCTTC 387
| ||||| ||| ||||||| | ||||| | ||| | |||||||||||||||||||||
Sbjct 319 TCCTCGGCAAATCAGATGATGCCGACGCGCTCTTCTG-TGCCGCTATCTTGCGCCGCTTC 377
Query 388 CTCCACATCATC-ACCGACAAGTACGCGTCGTACGTGGTGAGACGGGGGATGA-CAGTTT 445
|||||||||| | |||||||| ||||| | |||||| || ||| | ||| | ||||
Sbjct 378 CTCCACATCA-CGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTC-GTTT 435
Query 446 TCGATAAGAAGAAGAAAAAAGCAATGTACGAGCACATTCTCCACTACGCGAGCCACATAG 505
|||| ||| ||| ||| || ||||||||||||||||||||| || | || | || |||
Sbjct 436 TCGACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAG 495
Query 506 CGCGTGATAAACACG 520
|| ||||| ||||||
Sbjct 496 CGTGTGATCAACACG 510
> Ahg950763 jgi|Araly1|950763|scaffold_802650.1
Length=1027
Score = 196 bits (106), Expect = 2e-49
Identities = 247/315 (78%), Gaps = 10/315 (3%)
Strand=Plus/Plus
Query 211 ATGATCTCGAAGTTAGACCAAAGAAAGCTTCAAACGATGGCGTCATTGCTGACATCAGAT 270
|||||||| |||| |||| ||| | |||||| | |||||| || |||||||| |||||
Sbjct 201 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA- 259
Query 271 C-CCGATTACTTCTTGATGATCG-CAAGAAACATGAACGGCTCCAAACGCATTCAGAAAC 328
| ||||||||||| || ||||| | | ||||| | ||||||| | |||| | ||||| |
Sbjct 260 CTCCGATTACTTCATGGCGATCGTC-ACAAACAAGTACGGCTCGAGACGCGTGCAGAAGC 318
Query 329 TTCTCGGAAAAACAGATGACGTGGACGCTTTATTC-GCCGCCGCTATCTTGCGCCGCTTC 387
| ||||| ||| ||||||| | ||||| | ||| | |||||||||||||||||||||
Sbjct 319 TCCTCGGCAAATCAGATGATGCCGACGCGCTCTTCTG-TGCCGCTATCTTGCGCCGCTTC 377
Query 388 CTCCACATCATC-ACCGACAAGTACGCGTCGTACGTGGTGAGACGGGGGATGA-CAGTTT 445
|||||||||| | |||||||| ||||| | |||||| || ||| | ||| | ||||
Sbjct 378 CTCCACATCA-CGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTC-GTTT 435
Query 446 TCGATAAGAAGAAGAAAAAAGCAATGTACGAGCACATTCTCCACTACGCGAGCCACATAG 505
|||| ||| ||| ||| || ||||||||||||||||||||| || | || | || |||
Sbjct 436 TCGACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAG 495
Query 506 CGCGTGATAAACACG 520
|| ||||| ||||||
Sbjct 496 CGTGTGATCAACACG 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5