BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21630.2
Length=4385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472400 jgi|Araly1|472400|fgenesh2_kg.1__2354__AT1G21630.1 3326 0.0
> Ahg472400 jgi|Araly1|472400|fgenesh2_kg.1__2354__AT1G21630.1
Length=4316
Score = 3326 bits (1801), Expect = 0.0
Identities = 2031/2141 (95%), Gaps = 19/2141 (1%)
Strand=Plus/Plus
Query 69 AGCTGTACCGGTTTCAATCTCAAATCCTGGG-AATTGAAATTTGTTTCTCTGTCGGAGAA 127
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1 AGCTGTACCGGTTTCAATCTCAAATCCCGGGAAATTGAAATTTGTTTCTCTGTCGGAGAA 60
Query 128 TCATCATCGACTTCTCTGCTA---CTTCTCTCCGCGCTCTCCTTCGTCGTCGTCGAT-CT 183
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 61 TCATCATCGACTTCTCTGCTACTTCTTCTCTCCGCGCTCT-CTTCGTCGTCGTCGATCCT 119
Query 184 CTTCAGCTTCACCGATCTCATTTCCAATCCTG-AAAAATCGATGTGGTACTGATCTACGA 242
||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 CTTCACCTTTGCCGATCTCATTTCCAATCCTGAAAAAATCGATGTGGTACTGATCTACGA 179
Query 243 TTGTGCTCCGTTGGTAGCCTTATGAATTAGGGTTTTTCTTACGCATC-TTCGTATGTGGA 301
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 180 TTGTGCTCCGTTGGTAGCCTTATGAATTAGGGTTTTTCTTACGCATCATT-GTATGCGTT 238
Query 302 GA-TTGGATCGTGTTCGGAAAACTTCTGGACACTGTCTTCGCTGCTAGATTTTTGGATCA 360
|| ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 239 GATTTGGATCGTGTTCGGAAAACTTCTGGACACTCTCTTCGCTGCTAGA-TTTCGGATCA 297
Query 361 TCC-TTTTGCGAAAATGGCAGCGCCAAGGCCGACTGGAGGCCAGGATCTGTTCGATACGT 419
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 -CCTTTTTGCGAAAATGGCAGCGCCAAGGCCGACGGGAGGCCAGGATCTGTTCGATACGT 356
Query 420 ATTTCAGGAGAGCAGATTTGGATGGAGATGGTCATATTAGTGGAGCTGAGGCTGTCGCTT 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATTTCAGGAGGGCAGATTTGGATGGAGATGGTCATATTAGTGGAGCTGAGGCTGTCGCTT 416
Query 480 TCTTCCAGGGATCGAATTTGCCTAAACATGTCCTTGCTCAGGTATGGTCCTATGCAGATT 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTTCCAGGGCTCGAATTTGCCTAAACATGTCCTTGCTCAGGTATGGTCCTATGCAGATT 476
Query 540 CaaaaaaaGCCGGCTACCTTGGCCGAGCGGAGTTTTATAATGCTCTAAAGTTGGTAACAG 599
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 477 CAAAAAAAGCTGGCTACCTTGGCCGACCGGAGTTTTATAATGCTCTAAAGTTGGTTACAG 536
Query 600 TGGCACAAAGTAGACGAGAGTTGACTGCTGAGATAGTAAAAGCTGCAATTTATAGTCCTG 659
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 537 TGGCACAAAGTAGACGGGAGTTGACTGCTGAAATAGTAAAGGCTGCAATTTATAGTCCTG 596
Query 660 CTTCAGCCAATATCCCTGCACCCAAAATAAATCTTGCTGCAACACCTTCTCCACAGCCCA 719
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CTTCCGCCAATATCCCTGCACCCAAAATAAATCTTGCTGCAACACCCTCTCCACAGCCCA 656
Query 720 GAGGAGTTTTGCCTGCTACACAAGCTCAGGGAGTTACATCAATGCCATCAGTAGCGGCTG 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 GGGGAGTTTTGCCTGCTACACAAGCTCAGGGAGTTACATCAATGCCATCAGTAGCAGCTG 716
Query 780 GTGTGAGAGGGCCTCACATGGGTGGAACTGTAAGCACTAGTAACCAACAAGTAGTCCCAG 839
|||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 717 GTGTGAGAGGGCCTCAAACGGGTGGAACTGTAAGTACTAGTAACCAACAAGTAGCCCCAG 776
Query 840 GCCAACAGAACCAGTTTACTGGGATACCTCCATCTCAGACACAGCAAAACTTTCAAAGCC 899
||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 777 GCCAACAGAACCAGTTTACTGGGCTGCCTCCATCTCAGACGCAGCAAAACTTTCAAAGCC 836
Query 900 CGGGAATGCCAGCTGGAGGGACTAATGCACCTCGTCCTGCAAACCAACCTATGCCATCTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CGGGAATGCCAGCTGGAGGGACTAATGCACCTCGTCCTGCAAACCAACCTATGCCATCTG 896
Query 960 ATTGGCTCAGCGGCAGAAGTGTTGGTCCCTCTGGGAACGTGAATTCTCAAATTCCTTCGA 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 ATTGGCTCAGCGGCAGAAGTGTTGGCCCCTCTGGGAACGTGAATTCTCAAATTCCTTCGA 956
Query 1020 GTCAGAGTACATATGGTTTGACAGCACCTAATTCAACTGCCAACCATATAACAAAACCAC 1079
|||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 957 GTCAGAATACATATGGTTTGACAGCACCTAATTCAACTGCCAACCATACACCAAAACAAC 1016
Query 1080 ATATAACACCTGCAGTAACAAGCTCTACAACAACCAGACCCCAAGAGTCAGCGCCTGTGC 1139
|||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1017 ATATGACACCTGCAGTAATAAGCTCTACAACAGCCAGACCCCAAGAATCAGCGCCTGTGC 1076
Query 1140 ACAATCCCCAAGAATCATCTGCTACTTTCGGTTCTCGTGTATCAAATGTTCCATCCAATC 1199
|||| ||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| |
Sbjct 1077 ACAAGCCCCAAGAATCATCTGCTACTTTTGGTGCTCGTGTTTCAGATGTTCCATCCAAGC 1136
Query 1200 AATTGGTGCCCAAGGATCCCAAGGAACTGGCTGCATCAGGAAACGGGTTTACCTCTGACT 1259
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1137 AATTGGTGGCCAAGGATCCCAAGGAACTGGCTGCATCAGGAAACGGGTTTGCCTCTGACT 1196
Query 1260 CACTTTTCGGAGATGTCTTTTCAGTTACTTCCACGCAGCCAAAACAACATCCTACGGGAA 1319
|| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1197 CAATTTTCGGAGATGTCTTTTCAGTTACTTCCACCCAGCCAAAACAACATACTACAGGAA 1256
Query 1320 GTGCATCAACAACAGGCATCTCATCGGTTACTACTGGAACTGTCGCGGGCCCTGAGATCA 1379
||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||
Sbjct 1257 CTGCATCAACAATGGGCATCTCATCTGTTCCTGCTGGAACTGTTACGGGCCCTGAGATCA 1316
Query 1380 CACAGTCTGTAGTTAGGCAAAGTTCAATCCCACAACAGGGTTCATTGAGCCAGCATGCTG 1439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CTCAGTCTGTAGTTAGGCAAAGTTCAATCCCACAACAGGGTTCATTGAGCCAGCATGCTG 1376
Query 1440 TTGGTGTTCAGACCCAGCTTACTGGAAACTCAGGGCAACCATATACTTCCTCAGGTGCGG 1499
|||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 1377 TTGGTGTTCAGAATCAGCTTACTGGAAAATCAGGGCAACCATATGCTCCCTCAGGTGCGG 1436
Query 1500 CTTCTGGTCCACCTGGCTCTACTGTTGGAGTTGGAATTTCAGCTACCAGTCAGTTGGCCC 1559
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 1437 CTTCTGGTCCACCTGGCTCTACTGTTGGAGTTGGAATTTCTGCTTCCAATCAGTTGGCCC 1496
Query 1560 AGCGTCCGCCCCACCCCCA----C-T-CTCAACCACAACCCCGGCCCCAGGGCCAGTCCC 1613
|||| |||||||||||||| | | | |||||||||||||||||||||| ||||||||
Sbjct 1497 AGCGACCGCCCCACCCCCACCCCCATCCCCAACCACAACCCCGGCCCCAGGTCCAGTCCC 1556
Query 1614 AACCTCCTTGGCCAAAAATGACTCCAGCTGATGTCCAGAAATATACCAAGGTTTTTGTGC 1673
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AACCCCCGTGGCCAAAAATGACTCCAGCTGATGTCCAGAAATATACCAAGGTTTTTGTGC 1616
Query 1674 AAGTTGACACTGATAGGGACGGAAAGATCACAGGGAACCAGGCTCGGAATTTGTTCTTAA 1733
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1617 AAGTTGACACTGATAGGGACGGAAAGATCACAGGGAACCAGGCTCGGAATCTGTTCTTAA 1676
Query 1734 GTTGGAGGCTTCCAAGAGACGCTTTGAAGCAGGTATGGGATTTATCTGATCAAGATAATG 1793
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GTTGGAGGCTTCCAAGAGAGGCTTTGAAGCAGGTATGGGATTTATCTGATCAAGATAATG 1736
Query 1794 ACAGCATGCTCTCCTTGCGGGAGTTCTGTATTGCGGTCTATCTTATGGAGCGTTACAGAG 1853
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1737 ACAGCATGCTCTCCTTGCGGGAGTTCTGTATTGCGGTTTATCTAATGGAGCGTTACAGAG 1796
Query 1854 AGGGCCGACCACTTCCCCCAGTGTTCCCAAGCTCTATAATACATAGTGAGAGCATGTTCA 1913
|||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1797 AGGGCCGACCTCTTCCCCCAATGTTCCCAAGCTCTATAATTCATAGTGAGAGCATGTTTA 1856
Query 1914 CCTCTCCTGGTCAATCTGTGGCACCACATGGCAATGCATCCTGGGGACATCCTCAAGGGT 1973
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1857 CCTCTCCTGGTCAGTCTGTGGCACCACATGGCAATGCATCCTGGGGACATCCACAAGGTT 1916
Query 1974 TCCAACAGCAACCACATCCTGGGGGCTTAAGGCCACCAGCTGGTCCCAAAGGAAAGCCTC 2033
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1917 TCCAACAGCAACCACATCCTGGGGCCTTGAGGCCACCAGCTGGTCCCAAAGGAAAGCCTC 1976
Query 2034 CGAGGCCAGTGCCTCTGTCTCCTAGTGATGGAATGGTCCAGCCCACTCAGCCAAAGCGTA 2093
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 CGAGGCCAGTGCCTCTATCTCCTAGTGATGGAATGGTCCAGCCCACTCAGCCAAAGCGTA 2036
Query 2094 AAATGCCTGTGTTAGAAAAACCGCTGGTGGATCAACTTAGCAAAGAGGAGCAGGATTCAC 2153
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2037 AAATGCCTGTGTTGGAAAAACCGCTGGTGGATCAACTTAGCAAAGAGGAGCAGGATTCGC 2096
Query 2154 TCAACACGAAGTTTGAAGAAGCAACTGCTGTTGATAAAAAG 2194
| ||| | |||||||||||||||||||||||||||||||||
Sbjct 2097 TTAACTCAAAGTTTGAAGAAGCAACTGCTGTTGATAAAAAG 2137
Score = 3157 bits (1709), Expect = 0.0
Identities = 1996/2127 (94%), Gaps = 49/2127 (2%)
Strand=Plus/Plus
Query 2285 GTGGATGAACTCGAAAAAGAAATAGCTGATTCCAAGCAGAAAATTGATTTCTTCCGTGCT 2344
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2138 GTGGATGAACTCGAAAAAGAAATAGCTGATTCCAAGCAGAAAATTGATTTCTTCCATGCT 2197
Query 2345 AAGATGCAAGAACTTGTTTTATACAAGAGCAGATGTGACAACCGGTACAATGAGATCGCA 2404
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2198 AAGATGCAAGAACTTGTTTTATACAAGAGCAGATGTGACAACCGATACAATGAGATCGCA 2257
Query 2405 GAGAGAGTCTTGGGTGATAAACGTGAGCTTGAATCTCTAGCaaaaaaaTACGAGGAGAAA 2464
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2258 GAGAGAGTCTCGGGGGATAAACGTGAGCTTGAATCTCTAGCAAAAAAATACGAGGAGAAA 2317
Query 2465 TACAAGAAGTCTGGCAATGTGGGCTCTAAATTGACTATTGAAGAGGCCACATTCCGTGAT 2524
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2318 TACAAGAAGGCTGGCAATGTAGGCTCTAAATTGACTATTGAAGAGGCCACGTTCCGTGAT 2377
Query 2525 ATACAGGAGAAGAAAATGGAATTGTACCAGGCAATAGTCAAATTTGAAGAAGGCAAACTT 2584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 ATACAGGAGAAGAAAATGGAATTGTACCAGGCAATAGTCAAATTTGAAGAAGGCAAACTT 2437
Query 2585 GATGATAGTATAGTT-A--AGCGCACTGAACACATCCAGTCAGGCCTTGAGGAACTGATA 2641
|| |||||| | ||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2438 GACGATAGTGTTGTTAAGGAGCGCACTGAACACATCCAATCAGGCCTTGAGGAACTGATC 2497
Query 2642 AAAAATTTGAATGAGCGCTGCAAACAATATGGAGTACGTGGGAAACCCACTTCTCTGGTT 2701
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2498 AGAAATTTGAATGAGCGCTGCAAACACTATGGAGTACGTGGGAAACCCACTTCTCTGGTT 2557
Query 2702 GAGCTTCCTTTTGGTTGGCAGCCTGGAATCCAGGAAGGTGCTGCTGATTGGGATGAAGAT 2761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 GAGCTTCCTTTTGGTTGGCAGCCTGGAATCCAGGAAGGTGCTGCTGATTGGGATGAAGAT 2617
Query 2762 TGGGATAAGCTAGAGGACGAAGGGTTTACCTTCGTCAAGGAGCTTACACTTGATATTCAA 2821
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2618 TGGGATAAGCTAGAGGAGGAAGGGTTTACCTTCGTCAAGGAGCTCACACTTGATATTCAA 2677
Query 2822 AATGTCATAGCCCCACCAAAGGAAAAATCATCAGCGTGG-AGAAAAGAAGTTGATGTCTC 2880
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 2678 AATGTCATAGCCCCACCAAAGGAAAAATCATCAGCGTGGAAG-AAAGAAGTTGCTGTCTC 2736
Query 2881 TTCAAAAGAAGGTGAAGATGTTTCATTCTCAGATGCTGACTCTAAAACGGGGAAAAAGCA 2940
||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 2737 TTCCAAAGAAGGTGAAGAGGCTTCATCCTCAGATGCTGACTCTAAAACGGGGAAAAAGCA 2796
Query 2941 AAGCAGTGGT---GA--------AGAA-G-----A-TTCTGAGCAGTCAGAGGGTAAAAC 2982
| |||||||| || |||| | | |||||||||||||||||||||||
Sbjct 2797 AGGCAGTGGTGAAGAGGCTTCTGAGAAGGAACCAACATCTGAGCAGTCAGAGGGTAAAAC 2856
Query 2983 ATCCGATGTTGATGCCAGAGATAAAAACGGATCTCTGGATGACTCTAAAGTTAGAAAGGG 3042
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2857 ATCCGATGTTGATGCCAGAGATAAAAACGGATCTCTGGATGACTCTAATGTTAGAAAGGG 2916
Query 3043 CATTGAAGCTGATAGTTCACCTCGAACGAAAGATACGAGGAGTGAAAATGGCCATGATGA 3102
||||||||||||||||||||| ||||| |||| | || |||||||||||||||||||||
Sbjct 2917 CATTGAAGCTGATAGTTCACCCCGAACTAAAG--A-GAAGAGTGAAAATGGCCATGATGA 2973
Query 3103 TGGTGAATCTACTGCTTCTGCTGGCAAAACTGTAAATTATGACTCTCACGACGAGACAGA 3162
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2974 TGGTGAATCTACTGCTTCTGCTGGTAAAACTGTAAATTATGACTCTCATGACGAGACAGA 3033
Query 3163 TTCAGTTTCAAGCGTCAACCCTGACAACGGCAAGGACAAGGATCATGGGAAGTATGACAG 3222
||||||||||||| | ||||||| |||| |||||||||||||||| |||||||| |||
Sbjct 3034 TTCAGTTTCAAGCTTGAACCCTG---ACGGAAAGGACAAGGATCATGAGAAGTATGGCAG 3090
Query 3223 TGGTTTTGGATTTGGATTTGGGTTTGATGACTTCAGTATTAAGCCTATAAAAACTGGTTC 3282
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 3091 TGGTTTTGGCTTTGGATTTGGATTTGATGACTTCAGTATTAAACCTATAAAAACTGGTTC 3150
Query 3283 GACCATTTCAAATGACTTCCT--C-CCTCCTAAGTTATCTATATTTGCTGATTCCGTCCC 3339
||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 3151 GACCATTTCAAATGACTTCCTCCCTCCTCCTAAGTTATCTATATTTGCTGATTCTGTCCC 3210
Query 3340 AAGCCCACCGGCAAATGCAAGCGACGTTTCCCCTACAAAACCTTCTTTGTTTGCTGATTC 3399
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 3211 AAGCACACCGGCAAATGCAAGCGATGTTTCCCCTACAAAACCTTCTTTGTTTGCTGACTC 3270
Query 3400 AGTTCCGAGCACTCCAGCGACGAACAATGCCTCTTACCCAGGCCAGAAATCATTTTTTGA 3459
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 3271 AGTTCCGAGCACTCCAGCGACGAACAATGCCTCTTACGCAGGCCAGAAATCATTCTTTGA 3330
Query 3460 TGACTCGGTCCCGAGCACTCCTGCTTATCCAGGCAACTTGTTTGCTGAGAAGAAATCCTT 3519
||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 3331 CGACTCTGTCCCGAGCACTCCTGCTTATCCAGGCAACTTGTTTGCCGAAAAGAAATCCTT 3390
Query 3520 CTTTGACGACTCTGTCCCGAGCACCCCTGCTTATCCAGGCAACTTGTTTGCCGAGAAGAA 3579
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 3391 CTTTGACGACTCTGTCCCGAGCACTCCTGCTTACCCAGGCAACTTGTTTGCCGAGAAGAA 3450
Query 3580 ATCCTATTTCGATGACTCTGTCCCGAGCACTCCTGCTTATAGCACGTCTGATTTTGGTGG 3639
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3451 ATCATTTTTCGATGACTCTGTCCCGAGCACTCCTGCTTATAGCACGTCTGATTTTGGTGG 3510
Query 3640 GAAGCCATTTGCATCAGAGACTCCTCGTTCAGACAACCTGTTCCCAGGAAGAAGCCCCTT 3699
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3511 GAAGCCATTTGCATCAGAGACTCCTCGTTCAGACAACCTGTTCCCAGGAAGAAGTCCCTT 3570
Query 3700 TATGTTCGACTCTGTCCCAAGTACACCCGCCGCACACGATGACTTCTCTAACAACAGCTT 3759
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3571 CATGTTCGACTCTGTCCCAAGTACACCTGC---ACACGATGACTTCTCTAACAACAGCTT 3627
Query 3760 CTCCCGCTTCGATTCATTCAACAGCAACAACAACGATGCTTTCTCTCTATCCCGCACAGA 3819
|||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 3628 CTCCCGTTTCGATTCATTCAACA--A-CAAC---GATGCTTTCTCTCTATCCCGCACAGA 3681
Query 3820 CTCGATGCGCAGCACAAGCGAGCCTGACCCATTCGCATCAAGGTTTGATTCTTTCAACTA 3879
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3682 CTCAATGCGCAGCACAAGCGAGCCTGACCCATTCGCATCCAGGTTTGATTCGTTCAACTA 3741
Query 3880 TCAAAGATATGATTCCTTCAATGCACAAAGCTATGATTCCTCTAGCAACAACAATGCATC 3939
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 3742 TCAAAGATATGATTCCTTCAATGCACAAAGCTTTGATTCCTCTAGCAACAACAACGCATC 3801
Query 3940 GGAGACGCCTAAAGCCTCATTGACAAGATTCGACTCAATTGGAAGCACCAGGGACTCTGA 3999
|||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 3802 GGAGACACCTAAAGCCTCATTGACGAGATTCGACTCAATCGGAAGCACCAGAGACTCTGA 3861
Query 4000 TTACAGTCATGGGTTTGGGTTCGACGACCATGACCCGTTCGGTTCTACAGGACCATTCAA 4059
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3862 TTACAGTCACGGGTTTGGGTTCGACGACCATGACCCTTTCGGTTCTACAGGACCATTCAA 3921
Query 4060 AACAACGACAACTACAGCAGAGACACCTCGGAGTTCTGATAATTGGAATGCTTTCTAGCC 4119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3922 AACAACGACAACTACAGCAGAGACACCTCGGAGTTCTGATAATTGGAATGCATTCTAGCC 3981
Query 4120 AGAAGCCCACGTGCGATATGAA-TATGATCACATATCATATACTTTGCTGCTTTTATAGT 4178
| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 3982 ACAAGCCCACGTGTGATATGAAATATGATCACATATCATATACTTTGCTGCTTCTATAGT 4041
Query 4179 TTGAATTTACCAGTCGAAGAGTTATATGTATCTTCATTTCTTTGGTTTCACCTGCTTGCT 4238
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4042 TTGAATT-ACCAGTGGAAGAGTTATATGTATCTTCATTTCTTTGGTTTCACCTGCTTGCT 4100
Query 4239 TCattttttattgttaatatataatagtcttttttgccattttttcttttaaggattttt 4298
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 4101 TCATTTTTTATTGTTAATATATAATAGTCTTTTT-GCCATTTTAT-----AAGGATTTAA 4154
Query 4299 CGAAGAGTGTCCTTTGTTGGTCTCTGCGTAGTGTTTCTTTTTATTTGTGTCTTTGTTTGT 4358
||||||||||||||||||| |||||| ||||| ||||||||| |||| |||||||||||
Sbjct 4155 CGAAGAGTGTCCTTTGTTGCTCTCTGAGTAGTATTTCTTTTTCCTTGTTTCTTTGTTTGT 4214
Query 4359 TAACTTGAATAATGAATTATTATTTGT 4385
|| ||||||||||||||| ||||||||
Sbjct 4215 TAGCTTGAATAATGAATTCTTATTTGT 4241
Score = 163 bits (88), Expect = 9e-39
Identities = 103/110 (94%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 3510 AGAAATCCTTCTTTGACGACTCTGTCCCGAGCACCCCTGCTTATCCAGGCAACTTGTTTG 3569
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3315 AGAAATCATTCTTTGACGACTCTGTCCCGAGCACTCCTGCTTATCCAGGCAACTTGTTTG 3374
Query 3570 CCGAGAAGAAATCCTA-TTTCGATGACTCTGTCCCGAGCACTCCTGCTTA 3618
|||| |||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 3375 CCGAAAAGAAATCCTTCTTT-GACGACTCTGTCCCGAGCACTCCTGCTTA 3423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165854903134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5