BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21670.1
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472405 jgi|Araly1|472405|fgenesh2_kg.1__2359__AT1G21670.1 3286 0.0
> Ahg472405 jgi|Araly1|472405|fgenesh2_kg.1__2359__AT1G21670.1
Length=2212
Score = 3286 bits (1779), Expect = 0.0
Identities = 2076/2220 (94%), Gaps = 17/2220 (1%)
Strand=Plus/Plus
Query 1 AAGAGTCCACCATGAAACTC-ACAAAC-Gctctcttcttcttcttccttatctgtctcct 58
|||||||||||||||||||| || ||| | ||| ||||||||||||| ||| |||||
Sbjct 1 AAGAGTCCACCATGAAACTCAAC-AACTCCACTC-TCTTCTTCTTCCTCGTCTCTCTCCC 58
Query 59 ctcttTATCGTCAGCTTCATCGAACAAGCCTCAGCTTTCAAATGGCTCGACCATCTTATT 118
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 59 CTCTTTATCATCAGCTTCATCGAACAAGCCTCAGCTTTCAAATGGCTCAACCATCTTGTT 118
Query 119 CACGACGATAGGGAGACCCACTTTCGAATTCGACATCTTTACTCTCCCCACGAGCCACCG 178
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 119 CACGACGATAGGGAGACCCACCTTCGAATTCGACATCTTTACTCTCCCAACGAGCCATCG 178
Query 179 TCCACCGTCACCCGCCGATGAGCACCGTCTCACCGATGGCAAATCTATTAACTTCAACGG 238
||||||||||| ||||||||||||||||||||||| || ||||| |||| ||||||||
Sbjct 179 CCCACCGTCACCTGCCGATGAGCACCGTCTCACCGACGGAAAATCCGTTAATTTCAACGG 238
Query 239 CTATTTCGCTTCTCCTTCTACGGCGTTAATCTCACTTCTACCCAA-AAGAACTCAGATTC 297
| ||||||||||||||||| ||||||||||||||||||||||||| || | ||||| |||
Sbjct 239 CCATTTCGCTTCTCCTTCTCCGGCGTTAATCTCACTTCTACCCAAGAA-ATCTCAGGTTC 297
Query 298 AACCACAAGACGTGCATCTCATCTACGTCACTGAGAGAGCCGGAACTCCTAGCTTAAACT 357
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 298 AACCACAAGACTTGCATCTCATCTACGTCACCGAGAGAGACGGAACTCCTAGCTTAAACT 357
Query 358 ACGACGTCGTTCACAG-CGATAACGT-TGGATCTAGAATTCAGGTTCCGTTATTTTCCGG 415
|||||||||||||| | ||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 358 ACGACGTCGTTCAC-GACGATAAC-TCTGGATCTAGAGTTCAGGTTCCGTTATTTTCCGG 415
Query 416 CGAGGAACAACAGAGTGGTATGAATGTAAATTCCATGAAAGACACGCCTGTTTTAACAAA 475
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 416 CGAGGAACAACAGAGTGGTATGAATGTAAATTCCATGAAAGATACGCCTGTCTTAACCAG 475
Query 476 CGGCTATCTTGTCCACGTGTCGACACATGAGAATCCGGGTAAGCCCATGGCGAGTTGGGC 535
|| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 476 CGACTATCTTGTCTACGTGTCGACACATGAGAATCCGGGTAAACCCATGGCGAGTTGGGC 535
Query 536 CGCTGTTTACTCGACTGAGTTACGAACTAAGTCGACTCGGCGGCTT-ACACC-ACTGGGT 593
||| ||||||||||||||||||||||||||||||||||| ||| || ||||| || ||
Sbjct 536 CGCCGTTTACTCGACTGAGTTACGAACTAAGTCGACTCGACGG-TTAACACCGCCT-GGA 593
Query 594 ATCGCTGACTTTTCTCCGGCTGTGTCTCCGTCTGGGAAGTGGACTGCCGTGGCTTCGTTT 653
|||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 594 ATCGCTGATTTTTCTCCGGCGGTGTCTCCGTCTGGGAAATGGACCGCCGTGGCTTCGTAC 653
Query 654 GGAGAGAAAGGCTGGACTTGGAGCATGGTAGAGAAAGAGATTAGTTCAGACGTCTACGTT 713
|| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 654 GGTGAGAAAGGCTGGACTTGGAGCTTGGTAGAGAAAGAGATTAGTTCAGATATCTACGTT 713
Query 714 TTCCTGACTCAGGATGGAACTCAGCGAGTCAAGGTGGTCGAGCAAGGCGGGTGGCCGAGA 773
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 TTCCTGACTCGGGATGGGACTCAGCGAGTCAAGGTGGTCGAGCAAGGCGGGTGGCCAAGA 773
Query 774 TGGGTCGATGACTCGACTCTGTATTTCCACCGGAAAAGCGACGACGGTTGGATCAGCGTG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGGGTCGATGACTCGACTCTGTATTTCCACCGGAAAAGCGACGACGGTTGGATCAGCGTG 833
Query 834 TACCGAGCGATTTTACCCAAAACCGGACCGGTTACCACCAAATCGGTTACGATTCAAAGA 893
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 834 TACCGAGCGATTATACCCAAAACCGGACCGGTTACCACCAAAACGGTTACGATTCAACGA 893
Query 894 GTCACACCACCGGGTCTTCACGCTTTCACACCCGCCACGTCACCAAACAATAACAACTTC 953
|||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 894 GTCACACCACCGGGACTTCACGCGTTCACACCCGCCACGTCACCGAACAACAACAACTTC 953
Query 954 ATCGCGGTGGCTACAAGGAGGCCTGGATCAGAAATCCGCCACGTGGAGCTTTTCGATTTA 1013
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATCGCGGTGGCTACAAGGAGACCTGGATCAGAAATCCGCCACGTGGAGCTTTTCGATTTA 1013
Query 1014 AAGAAGAACGAGTTCGTCGAGTTGACTCGTTTAGTCTCGCCGAAGAGTCATCACTTTAAC 1073
||||||||||||||| ||||||||||||| | || |||||||||||||| |||||||||
Sbjct 1014 AAGAAGAACGAGTTCATCGAGTTGACTCGGCTGGTATCGCCGAAGAGTCAACACTTTAAC 1073
Query 1074 CCGTTTCTTTCCCCTGACTCGTCCCGAGTCGGATACCATAGCTGCAGAGGTGACGCAACT 1133
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 CCGTTTCTTTCCCCTGACTCGTCCCGAGTCGGATACCATAGCTGCAGAGGCGACGCAACT 1133
Query 1134 GGACGTAAAACTCCTCGGAATCTCCTCCAAAGCCTCAAAACAACTTCAAACGACCTCTCT 1193
||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1134 GGACGCAAAACTCCTCGGAATCTCCTCCAGAGCCTCAAAACCACTTCCAACGACCTCTCT 1193
Query 1194 CTCTTCAGATTCGACGGTGCGTTCCCGTCTATCTCGCCGGAAGGTGACAGATTCGCGTTC 1253
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1194 CTCTTCAGATTCGACGGTGCGTTCCCGTCAATCTCGCCGGAAGGTGACCGGTTCGCGTTC 1253
Query 1254 GTCTCTTTCACAGGCGTTTTCGTGGTGAACCCAGATGGTTCAGGTCTACGTCAATTGCTT 1313
||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct 1254 GTCTCTTTCACAGGCGTTTTCGTTGTGAAACCAGACGGTTCAGGGCTACGTCAATTGCTT 1313
Query 1314 CCACAAATGGGATTTGGAACAGTTTGGGATCCTATTCGACATGGAATCGTCTACACAAGC 1373
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1314 CCACAAATGGGATTCGGAACAGTTTGGGATCCAATTCGACATGGAATCGTCTATACAAGC 1373
Query 1374 TCAGGTCCAGCTTTAGCTCCAGGAAAGTCTCAAATCGATATTCTCGCCATAAACGTCGAT 1433
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1374 TCAGGTCCAGCTTTAGCTCCAGGGAAGTCTCAAATGGATATTCTCGCCATTAACGTCGAC 1433
Query 1434 GCACCTAGTCCAGCAACCGCCGTTAAAAAACTAACGACTACCGGTGAAAACAACGCTTTT 1493
||||| | |||| |||||||| |||||||| ||||||||||||| ||||||||||| |||
Sbjct 1434 GCACCGAATCCATCAACCGCCATTAAAAAATTAACGACTACCGGCGAAAACAACGCCTTT 1493
Query 1494 CCGTGGCCATCACCTGACGGTAAACGGATCGTGTTCCGTTCTGCGCGGTCCGGTACTAAA 1553
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1494 CCGTGGCCATCACCTGACGGTAAACGGATCGTGTTCCGTTCTTCTCGGTCCGGTACTAAA 1553
Query 1554 AACCTTTACATAATGGACGCAGAGAAAGGTGAATCCGGTGGTTTGTTCCGGTTAACGAAC 1613
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1554 AACCTTTATATAATGGACGCAGAGAAAGGTGAATCCGGTGGTTTGTTCCGGTTAACAAAC 1613
Query 1614 GGAAACTGGAACGATACGATAGCTACTTGGTCACCTGATGGTAATTGGATTGTGTTTGCA 1673
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1614 GGAAACTGGAACGATACGATAGCTACTTGGTCACCAGATGGTAATTGGATTGTGTTTGCA 1673
Query 1674 TCCAACCGGGAATTTCCCGGTACGTTGTTGATGAATATATATGTGGTTCATCCGGATGGG 1733
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TCGAACCGGGAATTTCCCGGTACGTTGTTGATGAATATATATGTGGTTCATCCGGATGGG 1733
Query 1734 ACCGGTTTAAGGAAGCTGGCGCAAAACTTGACCGGTTTGGTATCGATGCATCCGATGTTT 1793
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1734 ACCGGTTTAAGGAAGCTGGCGCAAAACTTGACTGGTGGGGTATCGATGCATCCGATGTTT 1793
Query 1794 AGTCCCGACAGTAAGAGAATCGTGTTTACTACCATTTATGCTGGAATCTCGGCGGAGCAG 1853
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1794 AGTCCCGACAGTAAGAGAATCGTGTTCACCACCATTTATGCTGGAATCTCGGCGGAGCAG 1853
Query 1854 ATCGGTAATCCGCATTTTAACGTCCCGAGTAGTGAGATTTTTACCGTGAACTTGGACGGC 1913
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1854 ATCGGTAATCCGCATTTTAACGTCCCGAGTAGCGAGATTTTTACTGTGAATTTGGACGGG 1913
Query 1914 TCTGGTTTGACGAGGCTAACGCATAACTCGGTGGAAGATGGACCACCCATGTGGTTCCCT 1973
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1914 TCTGGTATGACGAGGCTAACGCATAACTCGGTGGAAGATGGACCACCAATGTGGTTCCCT 1973
Query 1974 AAGATCAAAGCTACTGGTGATGTGGCTTGGCCTAAGAGGTTTGGCCCTAGTTGCTCTATC 2033
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 1974 AAGATCAAAGCTACCGGTGATGTGGCGTGGCCAAAGAGGTTTGGACCTAGTTGCTCTATC 2033
Query 2034 CAAGATTTCAAGACGCAAAATACTACCGTGAAAATGAAAATGAATAAGCCCGCAACAATG 2093
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2034 CAAGATTTCAAGTCGCAAAATGCGACCGTGAAAATGAAAATGAATAAGCCCGCAACAATG 2093
Query 2094 TCATCAATGTGTGTTGTTCCTTCACAATGATTTGTTATGTAACTTATTCTTCTAATAAAA 2153
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 2094 TCATCAATGTGTGTTGTTCCTTCACAGTGATTTGTTATGTAACTTATTCTTCGAATTAAA 2153
Query 2154 AACTCCGCTAGTTCATATCTTGTTAAGTATTTGGT--TAGCCTAAGAAATTATATAGCTT 2211
|||| | ||| | |||||||||||||||| || ||||||||||||| ||||| |||
Sbjct 2154 AACTT-GTTAGATAATATCTTGTTAAGTATCAGGGGGTAGCCTAAGAAATAATATAACTT 2212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86045863455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5