BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21680.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472406 jgi|Araly1|472406|fgenesh2_kg.1__2360__AT1G21680.1 3262 0.0
> Ahg472406 jgi|Araly1|472406|fgenesh2_kg.1__2360__AT1G21680.1
Length=2273
Score = 3262 bits (1766), Expect = 0.0
Identities = 2076/2227 (93%), Gaps = 16/2227 (1%)
Strand=Plus/Plus
Query 19 CCGCCATGAATATAT-CTCAGATTATTTTCTTCGCGTCCCTTCTTCTACGGCTTCACTTA 77
||||||||||||| | |||||||||| ||| ||||||||||||| |||| |||||| |
Sbjct 1 CCGCCATGAATAT-TGCTCAGATTATCTTCCTCGCGTCCCTTCTGCTACCACTTCACGCA 59
Query 78 TCAACGGCGGAACATCAAAATTCAAACGCTGGTGATGGAGACACCATCATATTCACCACT 137
||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 TCAACTTTGGAACATCAGAATTCGAACGCTGGTGATGGAGACACCATCATATTCACCACT 119
Query 138 CTAGGACGATCGCACTACGAATTTGACATATTCGCCCTCTCCACGACTCAACCGCCGTCA 197
||||||||||||| ||||||||| ||||||||| ||||||| |||||||| || |||||
Sbjct 120 CTAGGACGATCGCGCTACGAATTCGACATATTCTCCCTCTCAACGACTCATCCACCGTCC 179
Query 198 GTTTCCGGA-GAGCTCCGAATCACCGATGGGGAATCGGTAAATTTCAACGGCTATTTCCC 256
| |||| | |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 GATTCC-AACGAGCTCCGTATCACCGATGGAGAATCGGTAAACTTCAACGGCTATTTCCC 238
Query 257 GTCTCCTTCTCCGGCTCT-ATTATCTCTCCTTCCCGACGAAACCCTAATTCAAATGGAAG 315
||||||||||||||| || | | ||||||||||| |||||||||||||||||| | ||||
Sbjct 239 GTCTCCTTCTCCGGCGCTCA-TCTCTCTCCTTCCTGACGAAACCCTAATTCAACTTGAAG 297
Query 316 ATTCGTCTCCTCTGCATCTCATATACGTCACCGAGAGAAACGGTACTTCTAGCTTGTACT 375
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 298 ATTCGTCTCCTCTGCATCTCATCTACGTCACCGAGAGAAACGGTACTTCTAGCATATACT 357
Query 376 ACGATCTAGTTTACGGCGGTAATTCTGATTTTAAAACGAAACGAAGATCGGTGTTAGAAG 435
|||||||| |||||||||| | || |||| ||||| ||||||| |||||||||||||||
Sbjct 358 ACGATCTAATTTACGGCGGCGACTCCGATTCTAAAATGAAACGACGATCGGTGTTAGAAG 417
Query 436 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCCGCTTTGATCATCTGAGTGGCATGACGG 495
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 418 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCGGCTTTGATCATCGGAGTGGCATGACGG 477
Query 496 TAAATTCTTTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTATTGTCTACGTGTCAACCC 555
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 478 TAAATTCATTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTCTTGTCTACGTGTCAACTC 537
Query 556 ATGAGAGCTCAGGTGAGCCGAGAGCAAGCTGGACCGCCGTTTACTCTACCGAGTTAAAAA 615
| || | |||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 538 ACGAAAACTCAGGTGAGCCGAGAACAAGCTGGACCGCCGTTTACTCTACCGAGTTGAGAA 597
Query 616 CCGGGTTAACCAGGCGGTTAACACCGAGTGGTGTAGCTGATTTCAGCCCGGCGGTATCGC 675
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 598 CTGGGTTAACCCGGCGGTTAACACCGAGTGGTGTAGCTGATTTTAGCCCGGCGGTGTCGC 657
Query 676 CTTCCGGAAATTTAACGGCTGTGGCTTCATACGGAGAGAGAGGCTGGACAGGGGAAGTTG 735
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 658 CTTCCGGAAATTTAACAGCCGTGGCTTCGTACGGAGAGAGAGGCTGGACAGGGGAAGTTG 717
Query 736 AAGAGC-TACGTACGGACATCTATGTATTCTTGACTCGGGATGGGTCTCACCGTGTCAAG 794
|||||| || |||||||||| |||||||||| ||||||||||||| ||||||| ||||||
Sbjct 718 AAGAGCTTA-GTACGGACATATATGTATTCTCGACTCGGGATGGGACTCACCGAGTCAAG 776
Query 795 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTTGATGAGTCGACTCTGTATTTCCATAGA 854
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTCGATGAGTCGACTCTGTATTTCCATAGA 836
Query 855 AGAAGTGAGGAGGATGGTTGGATCAGCGTTTACCGAGCCATCTTACCTGAAAACGGACCG 914
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 AGAAGCGAGGAGGATGGTTGGATCAGCGTTTACCGAGCTATCTTACCTGAAAACGGACCG 896
Query 915 TTGACTACTGAGTCGGTGACAATTCAGCGAGTCACACCACCGGGAGTTCACGCTTTCACA 974
|||||||| ||||| ||||| || || ||||||||||||||||||||||||||||| |||
Sbjct 897 TTGACTACAGAGTCAGTGACTATACAACGAGTCACACCACCGGGAGTTCACGCTTTTACA 956
Query 975 CCGGCCACGTCACCAAACAACCACGAGTTCGTTGCGGTAGCTACAAGGAGACCAGGCTCG 1034
|| ||||||||||||||||||||||||||| | ||||| || || |||||||||||||||
Sbjct 957 CCTGCCACGTCACCAAACAACCACGAGTTCATAGCGGTGGCGACGAGGAGACCAGGCTCG 1016
Query 1035 GATTACCGCCACGTGGAGTTGTTTGATCTAAAGAGGAATGAGTTTATAGAGTTGACTCGT 1094
||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||
Sbjct 1017 GATTACCGCCACGTGGAGTTGCTTGATCTACAGAGGAATGAGTTTATTGAGCTGACTCGT 1076
Query 1095 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCATTCTTGTCCCCTGACTCGTCTCGAGTC 1154
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1077 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCGTTCTTGTCCCCTGATTCGTCTCGAGTC 1136
Query 1155 GGATATCATAGTTGTAGAGGCGATGCTAATGGACGGAGAAGTCCTCTGCTCTTCCTTGAA 1214
||||| ||||||||||||||||| ||||| |||||||||||||||||||| || || ||
Sbjct 1137 GGATACCATAGTTGTAGAGGCGAGGCTAACGGACGGAGAAGTCCTCTGCTTTTTCTAGAG 1196
Query 1215 AATATTCAAACCACTACAAGGGACCTCTCTCTCTTTAGAATTGATGGTTCGTTTCCTTCG 1274
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 AATATACAAACCACTACAAGGGACCTCTCTCTCTTTAGAATCGATGGTTCGTTTCCTTCC 1256
Query 1275 TTCTCACCTGGAGGTGATCGTATCGCATACGTTAAGATGCCTGGTGTGTTTGTGGTGAAG 1334
||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct 1257 TTCTCACCTGGAGGTGATCGTATTGCATACGTCAAAATGCCTGGTGTATTTGTGGTGAAG 1316
Query 1335 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAAGGGAATGGCGTTTTCGACAGCTTGGGAT 1394
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1317 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAACGGAATGGCGTTTTCGACGGCTTGGGAT 1376
Query 1395 CCGGTTCGACCTGGAATTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1454
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CCGGTTCGACCTGGAGTTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1436
Query 1455 GAGGTTGATGTTATCTCTATTGACGTTGATGCAGCCGATAAGTCATCTTCCGTGAGGAGG 1514
||||||||||| ||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 1437 GAGGTTGATGTCATCTCTATTGAAGTCGATGCAGCTGACAAGTCATCTTCCGTGAGGAGG 1496
Query 1515 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCTGATGGTAAGCGGATA 1574
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1497 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCGGATGGTAAGCGGATA 1556
Query 1575 GTGTTTCGTTCGGGGCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGA 1634
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GTGTTTCGTTCGGGCCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGC 1616
Query 1635 GAAAGCGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACCGACACAATGTGTAACTGG 1694
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1617 GAAAGAGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACTGACACAATGTGTAACTGG 1676
Query 1695 TCACCGGATGGGGAATGGATCGCGTTTGCATCAGATCGAGAAAGCCCTGGCTCGGGTAGT 1754
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1677 TCACCGGATGGGGAATGGATCGCGTTTGCATCCGATCGAGAAAGCCCTGGCTCGGGTAGT 1736
Query 1755 TTTGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTAAGGAAGCTCATCCAAAGCGGG 1814
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1737 TTCGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTTAGGAAACTCATCCAAAGCGGG 1796
Query 1815 ACGGGTGGGAGAACAAACCACCCGATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACT 1874
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1797 ACAGGTGGGAGAACAAACCACCCAATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACA 1856
Query 1875 TCTGATTATGCTGGAATCTCGGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1934
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TCTGATTATGCTGGGATCTCAGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1916
Query 1935 GGTGATATCTTCACGGTGAAATTAGATGGCTCTAATGTGAGGAGGCTAACGCATAACTCT 1994
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1917 GGTGATATCTTCACGGTGAAATTAGATGGCTCAAATTTGAGGAGGCTGACGCATAACTCT 1976
Query 1995 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCCAACAATGTGGAGCTA 2054
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1977 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCGAACAATGTGGTGCTG 2036
Query 2055 CAAAGGAGGAATGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTCAACAAGTACCCT 2114
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2037 CAAAGGAGGAACGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTAAACAAGTACCCT 2096
Query 2115 ACACTAAAAGGCCGAAAAATATCTTGTTAATATGTATC-T-A---CAGTTTTGTATCCCA 2169
|||||||||||||||||||| |||||||||||||||| | | ||| |||||||||
Sbjct 2097 ACACTAAAAGGCCGAAAAATCTCTTGTTAATATGTATGATTAGAACAGAAATGTATCCCA 2156
Query 2170 GCTTGTAACTCTACT--T-ATAGATTTGTATGAGACTGCCACTGTATATGCATAAGACTT 2226
||||||||||||||| | ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 2157 GCTTGTAACTCTACTACTTATATATTTGTATGAGACTGCCAATGTATATGTATAAGACTT 2216
Query 2227 TGTATTA 2233
|||||||
Sbjct 2217 TGTATTA 2223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5