BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21690.3
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472407 jgi|Araly1|472407|fgenesh2_kg.1__2361__AT1G21690.1 1646 0.0
> Ahg472407 jgi|Araly1|472407|fgenesh2_kg.1__2361__AT1G21690.1
Length=1162
Score = 1646 bits (891), Expect = 0.0
Identities = 940/964 (98%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 25 aaaattagaagaaaaaagaggcgaagaagagagagGAATGGCGCCAGTTCTTCAGAGCTC 84
|||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 AAAATTAGAAAAAAAAAAAGGCGAAG-A-AGAGAGGAATGGCGCCAGTTCTTCAGAGCTC 58
Query 85 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 118
Query 145 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCGCACATGCTCTTCTA 204
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCTCACATGCTCTTCTA 178
Query 205 TGGACCACCAGGCACTGGAAAAACCACTACTGCTCTTGCCATCGCTCACCAGCTCTTTGG 264
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 179 TGGACCGCCGGGCACTGGAAAAACCACTACTGCACTTGCCATCGCCCACCAGCTCTTTGG 238
Query 265 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAA 324
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 239 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTGAATGCAAGTGATGACAGAGGCATTAA 298
Query 325 TGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 384
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTGTTCGGACAAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 358
Query 385 AAGTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 444
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGCGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 418
Query 445 AGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 504
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAGATGCTCAGAACGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 478
Query 505 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 538
Query 565 GTTCAGGTTTAAACCACTTTCCGAAGAAGTCATGAGTAACCGTATATTGCATATTTGTAA 624
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 539 GTTCAGGTTTAAACCACTTTCTGAAGAAGTAATGAGTAACCGTATATTGCATATTTGTAA 598
Query 625 TGAAGAAGGTCTCAGCCTTGATGGAGAGGCTCTTTCAACTTTGAGCTCCATATCACAAGG 684
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TGAAGAAGGTCTCAGCCTTGGTGGAGAGGCTCTTTCAACTTTGAGCTCTATATCACAAGG 658
Query 685 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 718
Query 745 AACTTCTACAGATTTACTCAATGTGTCTGGGGTAGTTCCTCTAGAGGTAGTCAATAAACT 804
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||
Sbjct 719 AACTTCTACAGATTTACTCGATGTGTCTGGGGTAGTTCCCCTGGAGGTAGTCAATAAGCT 778
Query 805 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 838
Query 865 TGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 924
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGCAGAAGGATATCCGGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 898
Query 925 TGACAGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 984
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGACTGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 958
Query 985 TAAG 988
||||
Sbjct 959 TAAG 962
Score = 178 bits (96), Expect = 9e-44
Identities = 132/148 (89%), Gaps = 7/148 (5%)
Strand=Plus/Plus
Query 989 TACAATT-TGTGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATTCTGCTTGAATT 1047
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1016 TACAATTCT-TGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATCCTGCTTGATTT 1074
Query 1048 GGACCTGTGCCTTAAGACTTATGAGACTATCATAGTGTAGGTTTTGATAAAAA-----GT 1102
|||||| | ||||| ||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 1075 GGACCTTTTCCTTATGACTTATGAGACTGTCATAGTTTAGGTTTTGATAAAAAAAAAAGT 1134
Query 1103 TGGAGCGTTATGACGTTTTACTGGTTAC 1130
|||||| |||||||||||| ||||||||
Sbjct 1135 TGGAGCATTATGACGTTTTTCTGGTTAC 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5