BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21695.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472409 jgi|Araly1|472409|fgenesh2_kg.1__2363__AT1G21695.1 767 0.0
> Ahg472409 jgi|Araly1|472409|fgenesh2_kg.1__2363__AT1G21695.1
Length=838
Score = 767 bits (415), Expect = 0.0
Identities = 588/663 (89%), Gaps = 45/663 (7%)
Strand=Plus/Plus
Query 191 TAATGGTCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TAATGGTCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGA 196
Query 251 TCCGACCCGGTGTACCTAAAACCCGACCCGGTGATGATGATCCAGCTCTTCTTCAACCAC 310
|||||||||||||||| |||||||||||| | | ||||| | ||||||| ||
Sbjct 197 TCCGACCCGGTGTACCCAAAACCCGACCC-G-G-TGATG----A--TCTTCTT----CA- 242
Query 311 CTCCTCCTAACAAACTTCCTCCTCTCAAATTAAAATCAACTCCGCCGTCGAATTCGCCAT 370
| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 243 C-CCTCCTAACAAACTTCCTCCTGTCAAATTAAAACCATTTCCGCCGTCGAATTCGCCAT 301
Query 371 CTCCGTCGtcttcttcttctttcttctctGAATCCAGAAGCCGACCAGTCTCTCCCTTCG 430
|| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CT-C--CGTCTTC-GC--CTTTCTTCTCTGAATCCAGAAGCCGACCAGTCTCTCCCTTCG 355
Query 431 CTCCTCCTCCGTC-T-TT-CAAGCTGAAATCGCCTTCAGATTCCGACTCCAACTGTTCAG 487
||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 CTCCTCCTCCGTCGTCTTTCAAGCTCAAATCGCCTTCAGATTCCGACTCCAACTGTTCAG 415
Query 488 -CATCTCCGACTCCATATTTCCGATCTTCTTCTCCTCGTGCCGGTGGCTCATTGCCTCGG 546
| |||||||||||||||||||||||||||| ||||| |||||||| || || || |||
Sbjct 416 GCC-CTCCGACTCCATATTTCCGATCTTCTTCCCCTCGAGCCGGTGGTTCTTTCCCCCGG 474
Query 547 TGtttttttCCCAAGTCATTATTTGGGTTGAAAAAGAGTAAGAGCGGCGATTTAAAAAAG 606
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 475 TGTTTTTTTCCCAAGTCATTGTTTGGTTTGAAGAAGAGTAAGAGCGGCGATTTAAAAAAG 534
Query 607 ACCGGTCAGCAGGAACCATCATCAACAACATCGGAGTCTGACAATTTCTATGAATCGGGA 666
||||||||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 535 ACCGGTCAG--G-AA---TCATC---------GGAGTCTGACAATTTCTATGAATCGGGA 579
Query 667 ACAACGCTTTCTCCGTCGGAAGAAGATTCTAGCCAGGGATCGCCGGTATCTTCGAGGTGG 726
|||||| |||||||||||||||| ||||||||| |||||| | || ||||||||||||
Sbjct 580 ACAACGTTTTCTCCGTCGGAAGA---TTCTAGCCACGGATCGGCAGTTTCTTCGAGGTGG 636
Query 727 AGTTCGCCGAAATCGTCCTTCTCTTCTCGCCGTGGTTCGCCGCTAAAACGGACTGATTCG 786
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 637 GGTTCGCCGATATCATCCTTCTCTTCTCGCCGTGGTTCGCCGCTGAAACGGACTGATTCA 696
Query 787 GATTTAAGCTCTTATGAGaaaaaaaCCATGTTAATGATAGCTCGTTCCCGCCTTGGTTA- 845
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 697 GATTTAAGCTCTTATGAGAAAAAAACCATTTTAATGATGGCTCGTTCCCGCCTCGGTTAG 756
Query 846 AAT 848
|||
Sbjct 757 AAT 759
Score = 185 bits (100), Expect = 4e-46
Identities = 127/138 (92%), Gaps = 10/138 (7%)
Strand=Plus/Plus
Query 1 ATAAATAAATAAAAATGCTGTCAAGACACAAAATTCGTTGAATGTTATAGTCTTCACATA 60
||||||||||||||||||||||||||||| ||||||| | || | | ||||||||||
Sbjct 1 ATAAATAAATAAAAATGCTGTCAAGACAC-AAATTCG-T---TG--A-A-TCTTCACATA 51
Query 61 AAACTGTCATAAATCTGGATACGTTCTAAAAATAATTGATCTAATCTAAATCTATAAGTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GAACTGTCATAAATCTGGATACGTTCTAAAAATAATTGATCTAATCTAAATCTATAAGTA 111
Query 121 GTTTCTTATTAGTA-GAA 137
|||||||||||||| |||
Sbjct 112 GTTTCTTATTAGTAAGAA 129
Score = 108 bits (58), Expect = 1e-22
Identities = 76/84 (90%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 885 AATCAAATAAAAATGAT-TTTGAGTTTTTCATTGCGACAAGAACGAATATGTTACATGTA 943
||||||||||||| || |||||||||||||||||||||||||| ||| | |||||||
Sbjct 757 AATCAAATAAAAA-AATATTTGAGTTTTTCATTGCGACAAGAACTAATGTAC-ACATGTA 814
Query 944 GATTTGTAATGAAATTGTCTATAT 967
||||||||||||||||||||||||
Sbjct 815 GATTTGTAATGAAATTGTCTATAT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5