BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21700.1
Length=2737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472410 jgi|Araly1|472410|fgenesh2_kg.1__2364__AT1G21700.1 4222 0.0
> Ahg472410 jgi|Araly1|472410|fgenesh2_kg.1__2364__AT1G21700.1
Length=2709
Score = 4222 bits (2286), Expect = 0.0
Identities = 2608/2753 (95%), Gaps = 63/2753 (2%)
Strand=Plus/Plus
Query 1 AAAGAAATTGCGAGAAAAAGGTTTGGTGTTTAGCTCGAGAGCTGGAAATCAGAACGACTC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAGAAATTGCGAGAAAAAGGTTTGGTGTTTAGCTCGAGAGCTAGAAATCAGAACGACTC 60
Query 61 GGAGGAGAGAAGACAAAGAAAGCAATTCTTTTTACTAAGGGTCTTGCTTCGATTCCACAG 120
|||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 61 GGAGCAGAGAAGACAAAGAAAGCAATTCTTTTTACTCAGGTTCTTGCTTTGATTCCACAG 120
Query 121 AACCCAAAACCTCTATTTCTCTATCTTCATCCACAAAAATGCCAGCTTCTGAAGATAGAA 180
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 121 AACCCAAAACCTCTCTTTCTCTATCTTCACCCACAAGAATGCCAGCTTCTGAAGATAGAA 180
Query 181 GAGGGAAATGGAAAAGGAAGAAGAGAGGGGGGTTATCGGCGGCGAGGAAACCGAAACAAG 240
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAGGGAAATGGAAACGGAAGAAGCGAGGGGGATTATCGGCGGCGAGGAAACCGAAACAAG 240
Query 241 AGGAGGAAGATATGGAGGAAGAAGACGAAGAGAATAACAACAACAACAACGAAGAAATGG 300
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 241 AGGAGGAAGATATGGAGGAAGAAGAAGAAGAGAAT---AACAACAACAACGAAGAAATGG 297
Query 301 ATGACGTTGAAAATGCCGATGAGCTTCAGCAAAACGGCGGCGCAACTCCCGATCCGGGAC 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 ATGACGTTGAAAATGCCGATGAGCTTCACCAAAACGGCGGCGCAACTCCCGATCCGGGAC 357
Query 361 TTGGTATTGGCGAGGTAGTTGAAGATTCTGGTTCGCGCATCTCTGATTTCCCGGCAGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGGTATTGGCGAGGTAGTTGAAGATTCTGGTTCGCGCATCTCTGATTTCCCGGCAGTGG 417
Query 421 TTAAGCGTGTTGTGATCCGGCCACACGCGTCTGTAATGGCTGTTGTGGCGGCTGAGAGAG 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTAAGCGCGTTGTGATCCGGCCACACGCGTCTGTAATGGCTGTTGTGGCGGCTGAGAGAG 477
Query 481 CTGGTTTGATAGGGGAGACTAGAGGGCAAGGTTCACTTCCAGCTCTGGAGAACATTTCGT 540
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 CTGGTTTGATTGGGGAGACTAGAGGGCAAGGTTTACTTCCAGCTCTGGAGAACATTTCGT 537
Query 541 TTGGGCAATTGCAAGCGTTATCTACTGTACCTGCTGATTCTCTTGATCTTGAGAGGAGTG 600
||||||||||||||||||||||||||||||| ||||| | || || | ||
Sbjct 538 TTGGGCAATTGCAAGCGTTATCTACTGTACCGGCTGA-T-TC----TC-T--------TG 582
Query 601 ATGGATCGTCTTCGGCTTATGTTATCTCTCCACCACCTATTATGGATGGAGAAGGAGTTG 660
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 583 ATGGATCGTCTTCGGCTTATGTTATATCTCCACCACCTATTATGGAAGGAGAAGGAGTTG 642
Query 661 TTAAACGGTTTGGGGATCTGGTTCATGTCTTGCCTATGCATTCAGATTGGTTTGCACCAA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TTAAACGCTTTGGGGATCTGGTTCATGTCTTGCCTATGCATTCAGATTGGTTTGCACCAA 702
Query 721 ACACAGTAGATCGACTTGAAAGGCAAGTGGTGCCACAGTTTTTCTCTGGGAAATCGCCAA 780
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 703 ACACAGTGGATCGACTTGAAAGGCAAGTGGTGCCACAATTTTTCTCTGGGAAATCGCCAA 762
Query 781 ATCATACACCCGAAAGTTATATGGAATTCAGGAACGCCATTGTTTCCAAATATGTAGAGA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 763 ATCATACACCCGAAAGTTATATGGAATTCAGGAACGCCATTGTTTCAAAATATGTGGAGA 822
Query 841 ACCCTGAAAAGACACTGACGATTTCTGATTGCCAAGGATTGGTAGATGGTGTTGACATTG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 823 ACCCTGAAAAGACACTGACGATTTCTGATTGCCAAGGATTGGTAGATGGTATTGACATCG 882
Query 901 AAGATTTTGCACGAGTTTTCCGTTTTCTTGATCACTGGGGAATAATCAATTACTGTGCCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AAGATTTTGCACGAGTTTTCCGTTTTCTTGATCACTGGGGAATAATCAATTACTGTGCCA 942
Query 961 CTGCCCAGTCACATCCTGGCCCTT-TGAGAGATGTATCGGATGTGAGGGAGGACACAAAT 1019
||||||||||||||||||| |||| | |||||||||| ||||||||||||||| ||||||
Sbjct 943 CTGCCCAGTCACATCCTGGGCCTTCT-AGAGATGTATTGGATGTGAGGGAGGATACAAAT 1001
Query 1020 GGCGAGGTCAATGTGCCGTCTGCTGCTTTAACATCTATTGATAGTTTGATCAAATTTGAC 1079
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGTGAGGTCTATGTGCCGTCTGCTGCTTTAACATCTATTGATAGTTTGATCAAATTTGAC 1061
Query 1080 AAGCCCAACTGTAGACACAAGGGGGGTGAAGTCTATTCATCCTTGCCAAGTTTGGATGGT 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1062 AAGCCCAACTGTAGACACAAGGGGGGTGAAGTCTATTCATCCTTGTCAAGTTTGGATGGT 1121
Query 1140 GACAGCCCTGACTTGGACATCAGAATTCGTGAACACCTATGTGATAGTCATTGCAACCAT 1199
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1122 GACAGCCCTGACTTGGACATCAGAATTCGTGAACACCTATGTGATAATCATTGCAACCAT 1181
Query 1200 TGTTCTCGACCGCTTCCAACTGTGTACTTCCAATCGCAAAAGAAGGGGGATATACTCTTA 1259
||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 1182 TGTTCCCGACCGCTTCCAACTGTGTATTTCCAATCGCAAAAGAAGGGTGATACACTCTTA 1241
Query 1260 TGCTGTGATTGTTTTCACCATGGAAGATTTGTTGTTGGACATTCTTGTCTTGACTTTGTA 1319
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGCTGTGATTGTTTTCAGCATGGAAGATTTGTTGTTGGACATTCTTGTCTTGACTTTGTA 1301
Query 1320 AGAGTGGATCCAATGAAATTTTATGGCGATCAAGATGGAGACAATTGGACTGATCAGGAA 1379
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AGAGTGGATCCAACCAAATTTTATGGCGATCAAGATGGAGACAATTGGACTGATCAGGAA 1361
Query 1380 ACTCTCTTGCTTCTTGAAGCTGTGGAACTCTACAATGAAAATTGGGTTCAAATTGCTGAT 1439
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1362 ACTCTCTTGCTTCTTGAAGCTGTGGAACTCTATAATGAAAATTGGGTTCAAATTGCTGAT 1421
Query 1440 CATGTTGGTTCCAAGTCAAAAGCTCAATGCATTCTTCATTTTCTTCGATTACCTGTGGAG 1499
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1422 CATGTTGGTTCCAAGTCAAAAGCTCAATGCAGTCTTCATTTTCTTCGATTACCTGTGGAG 1481
Query 1500 GATGGTCTATTAGATAATGTTGAGGTTTCTGGTGTAACTAATACGGAAAACCCTACAAAT 1559
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1482 GATGGTCTTTTAGATAATGTTGAGGTTCCTGGTGTAACGAATACGGAAAACCCTACAAAT 1541
Query 1560 GGATATGACCACAAAGGAACAGATTCAAATGGGGATTTACCTGGATATTCCGAGCAAGGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GGATATGACCACAAAGGAACAGATTCAAATGGGGATTTACCTGGATATTCCGAGCAAGGT 1601
Query 1620 TCTGACACTGAGATCAAGCTTCCATTTGTGAAGTCTCCGAATCCGGTTATGGCATTGGTT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TCTGACACTGAGATCAAGCTTCCATTTGTGAAGTCTCCGAATCCGGTTATGGCATTGGTT 1661
Query 1680 GCATTTTTGGCATCAGCTGTTGGACCTCGAGTTGCTGCGTCCTGTGCCCATGAATCCCTC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1662 GCATTTTTGGCATCAGCTGTTGGACCTCGAGTTGCTGCGTCCTGTGCCCATGAGTCCCT- 1720
Query 1740 T-CGGTTTTATCTGAGGACGATAGGATGAAATCTGAGGGAATGCAAGGGAAAGAAGCCAG 1798
| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1721 TGCGGTTTTATCTGAGGACGATAGGATGAAATCCGAGGGAGTGCAAGGGAAAGAAGCCAG 1780
Query 1799 CTTGCTTGATGGAGAAAATCAACAGCAAGATGGAGCACACAAAACATCAAGCCAAAACGG 1858
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 CTTGCTTGAAGGAGAAAATCAACAGCAAGATGGAGCACACAAAACATCAAGCCAAAACGG 1840
Query 1859 AGCAGAAGCGCAGACTCCACTGCCACAGGATAAGGTTATGGCAGCATTTAGAGCCGGTCT 1918
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AGCAGAACCGCCGACTCCACTGCCACAGGATAAGGTTATGGCAGCATTTAGAGCCGGTCT 1900
Query 1919 ATCAGCTGCAGCAACAAAAGCAAAATTGTTTGCTGATCATGAGGAACGCGAAATCCAGAG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1901 ATCAGCTGCAGCAACAAAAGCAAAATTGTTTGCTGATCATGAGGAACGCGAAATCCAAAG 1960
Query 1979 ACTTTCTGCTAATATCGTTAATCACCAGCTGAAGAGGATGGAGCTGAAATTAAAGCAGTT 2038
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1961 ACTTTCTGCAAATATCGTTAATCACCAGCTGAAGAGGATGGAGCTGAAGCTAAAGCAGTT 2020
Query 2039 CGCAGAAATTGAAACACTGTTGATGAAAGAATGCGAACAAGTAGAGAAAACCCGTCAGAG 2098
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2021 TGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAAGTAGAGAAAACTCGTCAGAG 2080
Query 2099 ATTTTCTGCAGAACGGGCTCGTATGCTCTCAGCAAGATTTGGATCTCCTGGAGGAATCTC 2158
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2081 ATTTTCTGCAGAACGGGCTCGTATGCTCTCCGCAAGATTTGGATCACCTGGAGGAATCTC 2140
Query 2159 TCCACAGACTAATAAT------CTCCAAGGCATGTCTCTATCCACAGGTGGTAACAACAT 2212
|||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2141 TCCACAGATTAATAATAATAATCTCCAAGGCATGTCTCTATCCACAGGTGGTAATAACAT 2200
Query 2213 CAATTCTCTCATGCATCAGCAACATCAGCA--A-CAACAA---GCTTCCGCAACTTCTCA 2266
|||||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||
Sbjct 2201 CAATTCTCTCATGCATCAGCAACAGCAGCAGCAGCAACAACAAGCTTCAGCAACTTCTCA 2260
Query 2267 ACCAAGCATAATCCCAGGATTCAGCAACAACCCGCAAGTTCAAGCACAGATGCATTTCAT 2326
|||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2261 ACCAAGCATAATTCCGGGATTTAGCAACAACCCGCAAGTTCATGCACAGATGCAGTTCAT 2320
Query 2327 GGCACGacaacaacaacaacaacaacaacaacaacaacaacaacaGCAAGCTTTCTCGTT 2386
|||||| | |||||||||||||||||||||||| || |||||| ||
Sbjct 2321 GGCACG-C--CAACAACAACAACAACAACAACAA-----------GC----TTTCTCTTT 2362
Query 2387 TGGCCCGAGATTACCTCTCAATGCAATACAGACCAATGCAGGATCAACAGCTTCACCAAA 2446
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2363 TGGCCCGAGATTACCTCTTAATGCGATACAGACCAATGCAGGATCAACAGCATCACCAAA 2422
Query 2447 CGTCATGTTTGGCAACAACCAACTAAATAACCCTGCAGCAGCTGGAGCAGCATCGATCAA 2506
|||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 2423 CGTCATGTTTGGCAACAACCAACTTAATAACCCTGCAGCAG--G-AGCAGCATCGATCAA 2479
Query 2507 CCAGCCTTCGTTTAGTCACCCGATGGTTAGGTCTTCCACAGGTTCAGGCTCAGGGTCCGG 2566
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2480 CCAGCCTTCGTTTAGTCACCCGATGGTTAGGTCTTCCACGGGTTCAGGCTCAGGGTCCGG 2539
Query 2567 CTTAGGCTTAAACTAAGATCCATCTTTCTCTAGCTTATTTAGCTTATCAGTATCCATATT 2626
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2540 CTTAGGCTTAAACTGAGATCCATCT--CTCTAGCTTATTTAGCTTATCAGTATCCATATT 2597
Query 2627 TATTTCACCTTGTTATTTTTAAAGATAAGTTATTTGGCTTTGAGACCGTAGTCTTGTTCC 2686
||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2598 TATTTTGCCTTGTTATTTTTAAAGATAAGTTATT-GGCTTTGAGACCGTAGTGTTGTTCT 2656
Query 2687 AAGTTAGTGTCTTGTAGTATCAAACCATCA-T---C-ATCATCATTGTGAATT 2734
|||||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct 2657 AAGTTAGTGTCTTGTAGTATCAAATCATCTCTGAACCATCATCATTGTGAATT 2709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262654195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5