BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21710.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921153 jgi|Araly1|921153|scaffold_102434.1 1731 0.0
> Ahg921153 jgi|Araly1|921153|scaffold_102434.1
Length=1141
Score = 1731 bits (937), Expect = 0.0
Identities = 1078/1145 (94%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 24 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGACCTACATCTCAGCCGTCGATCTCTT 83
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGAGCTACATCACCGCCGTCGATCTCTA 60
Query 84 CCACCGTCAAACCACCACTGTCTCCGCCGGTCACACCGATTCTCAAACAGAAGCTACACA 143
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 61 CCACCGTGAAACCACCACTGTCTCCGCCGGTCACGCCGATTCTGAAACAGAAGCTACACA 120
Query 144 GAACAGG---AACACCTAAATGGTTCCCGTTAAAACTAACCCACACGGAGCTGACGT-TG 199
||||||| |||||||||||||||| ||||||||||||||||||||||||| || | |
Sbjct 121 GAACAGGAACAACACCTAAATGGTTCTCGTTAAAACTAACCCACACGGAGCTCAC-TCTA 179
Query 200 CCGTTAACTTTTCCGACGGGTCAAACATTCCGGTGGAAGAAAACTGGAGCGATTCAGTAT 259
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CCGTTAACTTTTCCGACGGGCCAAACATTCCGGTGGAAGCAAACTGGAGCGATTCAGTAT 239
Query 260 AGCGGAACGATTGGGCCTCACT-TAGTCTCTCTTAGACAACGTCCAGGAGACGACGCAGT 318
|||||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||
Sbjct 240 AGCGGAACGATTGGGCCTCA-TCTCGTCTCTCTTCGACAACGTCCAGGTGACGACACAGT 298
Query 319 TTCCTACTGCGTCCATTGTAGCACAAGCCCTAAATCCGCGGAGCTTGCGTTGCTCGATTT 378
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 299 TTCCTACTGCGTCCATTGCAGCACTAGCCCTAAATCAGCGGAGCTTGCGTTGCTTGATTT 358
Query 379 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAAGATCCTCG 438
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAGGATCCTCG 418
Query 439 TTTCGGAGAGCTAGCG-AGACATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTCG 497
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 419 TTTCGGAGAATTAGCGAAG-CATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTGG 477
Query 498 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTGCG-AGGATTACGAAGATG 556
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 478 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTG-GAAGGATTACGAAGATG 536
Query 557 GTGGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 616
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTCGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 596
Query 617 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAGGAAGAGTTTAGAAAGGCTGGT 676
|||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||
Sbjct 597 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAAGCAGAGTTTAGGAATGCTGGT 656
Query 677 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAAGCAAAGCCAGGT 736
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAATCAAAGCCAGGT 716
Query 737 GGTGGTAATGAATGGCTTCTTTCTCTGCGCAAAGTCGAACTCCAAGAGGCAGTTGCTGCG 796
||||| ||||||||||||||||||| || ||| | || ||||||||||||||| ||||
Sbjct 717 GGTGGCGATGAATGGCTTCTTTCTCTACGAAAATTGGATCTCCAAGAGGCAGTTTCTGCT 776
Query 797 CTGTGTACATTACCTGGTGTTGGTCCGAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 856
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 CTGTGTACATTACCTGGTGTTGGTCCAAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 836
Query 857 GATCAGCATAGTGCTATTCCGGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 916
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 GATCAGCATAGTGCTATTCCCGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 896
Query 917 CTGCCAGACCTTGCTGGTGCAAAACTGACACCTAAACTCCA-TGGCCGAGTTGCAGAAGC 975
||||||||||||||||||||||||||||||| ||||||||| | || |||| ||||||||
Sbjct 897 CTGCCAGACCTTGCTGGTGCAAAACTGACACTTAAACTCCACT-GCAGAGTGGCAGAAGC 955
Query 976 CTTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1015
Query 1036 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAACAAACTGGATGA 1095
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1016 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAGCAAACTGGATAA 1075
Query 1096 GTCTGCAGAAGTTAATGAAACTAGCTGTGATACGTTGAAGCCATGACTATG-TGTCTACC 1154
||| | |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 1076 TTCTACGGAAGATAATGAAACTAGCTGTGACACGATGAAGCCATGACTATGCTGTCTACC 1135
Query 1155 TAAGC 1159
|||||
Sbjct 1136 TAAGC 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5