BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21720.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912012 jgi|Araly1|912012|Al_scaffold_0001_2266 1033 0.0
Ahg927146 jgi|Araly1|927146|scaffold_202707.1 725 0.0
> Ahg912012 jgi|Araly1|912012|Al_scaffold_0001_2266
Length=615
Score = 1033 bits (559), Expect = 0.0
Identities = 593/610 (97%), Gaps = 0/610 (0%)
Strand=Plus/Plus
Query 117 GATCTTCGAGTACAATGGAAGTGCTGTTGTTGCTATGGTAGGTAAGAATTGTTTCGCCAT 176
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 6 GATCTTCGAGTACAATGGAAGTGCCGTTGTTGCTATGGTAGGTAAGAACTGTTTCGCCAT 65
Query 177 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACAATCGCCACTGATTTCCAGAGAAT 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 66 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACTATCGCCACTGATTTCCAGAGAAT 125
Query 237 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCCACCGATGTTCAAAC 296
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 126 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCTACCGATGTTCAAAC 185
Query 297 ACTATACCAGCGCTTGGTGTTTCGTCATAAGCTTTACCAGCTTAGGGAAGAGAGAGACAT 356
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 186 ACTGTACCAGCGCTTGGTGTTTCGTCATAAGCTTTACCAGCTTCGTGAAGAGAGAGACAT 245
Query 357 GAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGATTTGGTCC 416
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 246 GAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCTATTCTTTACGAGAAGAGATTTGGTCC 305
Query 417 TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCAC 365
Query 477 GATGGACTCTATCGGAGCCAAAGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTC 536
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 366 GATGGACTCTATTGGAGCCAAAGAGTTGGCTAAAGATTTTGTTGTATCTGGAACTGCTTC 425
Query 537 AGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGAATT 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGAATCACTCTATGGAGCCTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGAATT 485
Query 597 GTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTG 656
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 486 GTTCGAGACAATATCGCAAGCACTTCTCTCGTCGGTTGACCGTGATTGTCTGAGTGGTTG 545
Query 657 GGGAGGGCATGTTTACATTGTAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAG 716
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GGGAGGACACGTCTACATTGTAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAG 605
Query 717 GATGGATTGA 726
||||||||||
Sbjct 606 GATGGATTGA 615
> Ahg927146 jgi|Araly1|927146|scaffold_202707.1
Length=655
Score = 725 bits (392), Expect = 0.0
Identities = 559/640 (87%), Gaps = 10/640 (2%)
Strand=Plus/Plus
Query 96 AAACCCTAAGTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCTGTTGTTGCTATGGT 155
||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 5 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 64
Query 156 AGGTAAGAATTGTTTCGCCATCGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACAAT 215
||| ||||| || ||||| || |||||||||||||| || ||||| || |||| || ||
Sbjct 65 AGGGAAGAACTGCTTCGCTATAGCCAGTGATCGGAGGCTTGGTGTACAATTACAAACCAT 124
Query 216 CGCCACTGATTTCCAGAGAATCTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGG 275
||| || ||||| ||||||||||| ||||||||||||| | |||||||||| ||||| ||
Sbjct 125 CGCTACCGATTTTCAGAGAATCTCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 184
Query 276 TCTCGCCACCGATGTTCAAACACTATACCAGCG-CTTGGTGTTTCGTCATAAGCTT-TAC 333
||||||||||||||| || ||| | |||||||| || | | |||||||||||| || ||
Sbjct 185 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCG-TATTTCGTCATAAG-TTATAT 242
Query 334 CAGCTTAGGGAAGAGAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATC 393
|||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 243 CAGCTTAGGGAAGAAAGAGACATGAAGCCAGAAACTTTCGCTAGTCTTGTATCTGCCATT 302
Query 394 CTTTACGAGAAGAGATTTGGTCC-TTACTTATGCCAACCTGTGATTGCTGG-CTTGGGAG 451
||||| ||||| |||||||| || || ||| |||||||||||||||||||| || |||||
Sbjct 303 CTTTATGAGAAAAGATTTGGCCCATT-CTTGTGCCAACCTGTGATTGCTGGACT-GGGAG 360
Query 452 ATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAAAGAGTTAGCTAAAG 511
||||| |||| || ||||||||||| ||||| || || |||||||| |||||||||||||
Sbjct 361 ATGATAACAAACCCTTCATTTGCACTATGGATTCGATTGGAGCCAAGGAGTTAGCTAAAG 420
Query 512 ATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACA 571
|||||||||| ||||||||||||||||||||||| ||||| || ||||| || |||| ||
Sbjct 421 ATTTTGTTGTCTCTGGAACTGCTTCAGAATCACTATATGGTGCCTGTGAAGCCATGTTCA 480
Query 572 AGCCAGATATGGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTG 631
| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |
Sbjct 481 AACCAGATATGGAAGCTGAGGAATTGTTTGAGACAATTTCACAAGCACTTCTCTCTTCAG 540
Query 632 TTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTAACACCAACA-GAG 690
||||||| |||||||| ||||| |||||||| ||||| ||| |||||||||||| | |||
Sbjct 541 TTGACCGCGATTGTCTTAGTGGGTGGGGAGGTCATGTCTACGTTGTAACACCAA-ATGAG 599
Query 691 ATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTG 730
| |||||||| ||||| ||||||||||||||||||||||
Sbjct 600 GTCAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATCTG 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5