BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21722.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313065 jgi|Araly1|313065|fgenesh1_pm.C_scaffold_1001845 946 0.0
> Ahg313065 jgi|Araly1|313065|fgenesh1_pm.C_scaffold_1001845
Length=699
Score = 946 bits (512), Expect = 0.0
Identities = 599/641 (93%), Gaps = 5/641 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAACGTAATGGACTCATTCTTCACCGGATTCTCTCATTCTATCGGAAACTTCTTT 60
||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1 ATGGGTAACGTGTTGGACTCATTCTTCACCGGTTTCTCACATTCTATCGGAAACTTCTTT 60
Query 61 GGTTCTCCACTTGACTTTTTATCTGGAAAATCTTGCAGTTCGGTTTGTCCATCACCGTGG 120
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTCTCCACTTGACTTTCTGTCTGGAAAATCTTGCAGTTCGGTTTGTCCATCACCGTGG 120
Query 121 GATTTCATATGCTACGTTGAGAATTTCTGCGTGGCTAATCTTGCGAAAA-CCGCCTTAAT 179
||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 121 GATTTCATATGCTTCGTTGAGAATTTCTGCGTGGCTAATCTTGC-AAAAGCTGCCTTAAT 179
Query 180 CCTAATCTTATCCTACTTCTTTCTATTCTTCATCTACATGCTATACAAAGTTGGTTTTTG 239
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 180 CCTAATCTTATCCTACTTCTTTCTTTTCTTCATCTACATGTTATACAAAGTTGGGTTTTG 239
Query 240 GCATTGTATCATCCACGGTTTCTTCAAACTCCTATGGGTTTTGGTCTCTTGTTGGTTCTA 299
||||||||||||||||||||||| || |||||| |||| ||| |||||||| ||||||||
Sbjct 240 GCATTGTATCATCCACGGTTTCTGCAGACTCCTCTGGGCTTTAGTCTCTTGCTGGTTCTA 299
Query 300 CATGCTTGGCTATTGTTGTAGTTTCTTCTGCTATGATCTGCTACACTCTAAACGTAGAAG 359
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATGCTTAGCTATTGCTGTAGTTTCTTCTGCTATGATCTGCTACACTCTAAACGTAGAAG 359
Query 360 AAGACGCAGACACAACAGATATATAGAGGAAGATTatgatgataatagtgatgacgatga 419
||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 360 AAGACGCAGACACCACAGATATATAGAGGAAGCTTATGATGATAATAGTGATAACGATGA 419
Query 420 tgatgttgat---gatgatgGGTCGTTCACGTACCATAGATCGAAGCGAGAATGCAGAAA 476
||||| |||| ||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 420 TGATGATGATGGCGATTATGGGTCGTTCACATACCATAGATCGAGGCGAGAATGCAGAAG 479
Query 477 AGAAGAACGTCTTAGAAAGTCTCTGAGACCGAGGAACCATCGTGTTAGAGTTGGTGTGAG 536
|||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 480 AGAAGAGCGTCTTAGAAAGTCTTTGAGACCGAGGAGCCATCGTGTTAGAGTTGGTGTGAG 539
Query 537 GAAAGACCATCGTTCTGACTCGGGTTTGAGCCAACATGCTGATGGTGGTAGTCCGATACA 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 540 GAAAGACCATCGTTCTGACTCGGGTTTGAGCCAACATGCTGATGGAAGTAGTCCTATTCA 599
Query 597 TGGTGTTAGAGTGAGTAGAGAGTCTAAGTTCGCACGGAAGG 637
||||||||||||||| |||||||||||||| |||||||||
Sbjct 600 TGGTGTTAGAGTGAGCAGAGAGTCTAAGTTTACACGGAAGG 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5