BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21730.1
Length=3278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472412 jgi|Araly1|472412|fgenesh2_kg.1__2366__AT1G21730.1 5136 0.0
> Ahg472412 jgi|Araly1|472412|fgenesh2_kg.1__2366__AT1G21730.1
Length=3241
Score = 5136 bits (2781), Expect = 0.0
Identities = 3134/3293 (95%), Gaps = 70/3293 (2%)
Strand=Plus/Plus
Query 4 AAATTCATTTACAGAATTGTTTTGTAACCAATTAGATAGCAGTACTTTAATATCTGAGGC 63
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAATTCATATATAGAATTGTTTTGTAACCAATTAGGTAGCAGTACTTTAATATCTGAGGC 60
Query 64 TATTTTCGTCATTTTCAAATTATGGTGTGtttttttGGAGGGAGTGGGaaaaaaaaaaTC 123
|||||||| || | ||||||||||||||||||||| |||||||||
Sbjct 61 TATTTTCG------TC-----A-------TTTTTTTGGAGGGAGTGGGAACAAAAAAATC 102
Query 124 GATACATGAATGACGTGACCTCCATTGATTTCGGCGAACGAGCTTCTTCTTCTTCCctct 183
|||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 103 GATACATGAATGACGTGACCTCCATTGATTTCGGCGAACGAG---------CTT--CT-T 150
Query 184 ctctctctctTTGGCTCCATCTCTTACAGTAACTGTCTCTTGGAACCATTTCCTC-TTCA 242
| | ||||| | | || |||| ||||||||||||||||||||||| |||||| ||||
Sbjct 151 C-C-CTCTC--T--C-CC-TCTC--ACAGTAACTGTCTCTTGGAACCA-TTCCTCTTTCA 199
Query 243 CTAGTATCTTCTAACAATGTCTGCTACTAGGTCACAGAGATCATCCACGATCTCGCCGGC 302
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTAGTACCTTC-AACAATGTCTGCTACTAGGTCACAGAGATCATCCACGATCTCGCCGGC 258
Query 303 TCGTCCTCGTAGATCGCCGGCGACTATTCCGATGAAACGTCCGGAAACTCCTTCTTCCTC 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 259 TCGTCCTCGTAGATCGCCGGCGACTATTCCGATGAAACGGCCGGAAACTCCTTCTTCCTC 318
Query 363 TCACTTTTCTGCTTCTCCGGTTACTTCTTCTAGTCCATTACTACGTTCTAGTCCTAGTCC 422
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 319 TCACTTTTCTGCCTCTCCGGCTACTTCTTCTAGTCCATTATTACGTTCTAGTCCTAGTCC 378
Query 423 GTCTACTTCCTCCGCCGCCGCCTCTAGTACGGCTGTTGCTTCCACGAAACTGAAGGAGAA 482
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 379 GTCTACTTCCTCCGCCGCCGCCTCTGGTACGGTTGTTGCTTCCACGAAACTGAAGGAGAA 438
Query 483 TATTACAGTCACGATTCGGTTTCGTCCTCTCAGTCCACGAGAGGTCAATAATGGAGATGA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TATTACAGTCACGATTCGGTTTCGTCCTCTCAGTCCACGAGAGGTCAATAATGGAGATGA 498
Query 543 GATTGCGTGGTATGCAGATGGAGACTATACTATTAGGAATGAGTATAATCCATCTCTTTG 602
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 499 GATTGCCTGGTATGCAGATGGAGACTATACTATTAGGAATGAGTACAATCCAGCTCTTTG 558
Query 603 TTATGGATTTGATAGAGTATTTGGTCCACCAACAACTACTCGGCGTGTTTATGACATTGC 662
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 559 TTATGGATTTGATAGGGTATTTGGTCCACCAACCACTACTCGGCGTGTTTATGATATTGC 618
Query 663 TGCTCAACAAGTTGTTAGTGGGGCAATGTCAGGGATTAATGGTACTGTGTTTGCTTATGG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TGCTCAACAAGTTGTTAGTGGGGCAATGTCAGGGATTAATGGTACTGTGTTTGCTTATGG 678
Query 723 AGTTACTAGCAGTGGGAAGACTCATACAATGCATGGGGAGCAAAGGTCACCTGGAATAAT 782
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 679 AGTTACTAGCAGCGGGAAGACTCACACAATGCATGGGGAGCAAAGGTCACCTGGAATAAT 738
Query 783 TCCGTTGGCTGTAAAGGATGTATTTAGCATTATTCAGGAGACACCAGAACGGGAATTTCT 842
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCCGTTGGCGGTAAAGGATGTATTTAGCATTATTCAGGAGACACCAGAACGGGAATTTCT 798
Query 843 TCTTCGTGTTTCGTATCTAGAGATATACAATGAGGTCATCAATGACTTACTAGATCCAAC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TCTTCGTGTTTCGTATCTAGAGATATACAATGAGGTCATCAATGACTTACTAGATCCAAC 858
Query 903 AGGGCAAAATCTAAGAATACGAGAGGATTCTCAGGGCACATATGTTGAAGGTATAAAAGA 962
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 859 AGGGCAGAATCTAAGAATACGAGAGGATGCTCAGGGCACATATGTTGAAGGTATAAAAGA 918
Query 963 TGAGGTTGTCTTATCCCCTGCCCATGCTCTATCCCTAATAGCATCTGGAGAAGAACACAG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TGAGGTTGTCTTATCCCCTGCCCATGCTCTATCCCTAATAGCATCTGGAGAAGAACACAG 978
Query 1023 GCATGTTGGTTCAAATAATGTCAATCTTTTCAGCAGTCGGAGCCACACAATGTTCACCTT 1082
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 979 GCATGTTGGTTCAAATAATGTCAATCTTTTTAGCAGTCGGAGCCACACAATGTTCACCTT 1038
Query 1083 GACTATAGAAAGCAGTCCACATGGAAAGGGAGATGACGGCGAAGATGTTAGTCTCTCACA 1142
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1039 GACTATAGAAAGCAGTCCACATGGAAAAGGAGATGACGGCGAAGATGTTAGTCTCTCACA 1098
Query 1143 ATTGCACCTTATTGATCTTGCTGGGTCTGAAAGTTCTAAAACTGAAATAACTGGACAGCG 1202
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1099 ATTGCACCTTATTGATCTTGCTGGATCTGAAAGTTCTAAAACTGAAATAACTGGACAGCG 1158
Query 1203 AAGGAAAGAGGGCTCTTCTATCAATAAAAGTTTACTCACTCTT-GGCACTGTTATATCTA 1261
||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1159 GAGGAAAGAGGGCTCTTCCATCAATAAAAGTTTACTCACT-TTAGGCACTGTTATATCTA 1217
Query 1262 AATTGACAGACACCAAGGCAGCTCATATACCCTACAGGGATTCTAAACTTACGCGTCTCT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AATTGACAGACACCAAGGCAGCTCATATACCCTACAGGGATTCTAAACTTACGCGTCTCT 1277
Query 1322 TGCAGTCAACACTAAGTGGTCATGGACGAGTGTCACTTATTTGCACTATCACACCTGCAT 1381
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1278 TGCAGTCAACACTTAGTGGTCATGGACGAGTATCACTTATTTGCACTATCACACCTGCAT 1337
Query 1382 CCAGCACAAGTGAAGAGACGCACAACACACTGAAATTCGCTCAGAGGTGCAAGCATGTTG 1441
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1338 CCAGCACAAGTGAAGAAACGCACAACACACTAAAATTCGCTCAGAGGTGCAAGCATGTTG 1397
Query 1442 AAATCAAAGCTTCACGAAATAAGATTATGGATGAGAAGTCCCTTATAAAAAAGTATCAGA 1501
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1398 AAATCAAAGCTTCACGAAATAAGATTATGGATGAAAAGTCCCTTATAAAAAAGTATCAGA 1457
Query 1502 AAGAAATATCGTGTTTACAAGAAGAACTTACGCAATTGAGGCACGGAAACCAAGATGATT 1561
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||
Sbjct 1458 AAGAAATATCGTGTTTACAAGAGGAACTTACGCAGTTGAGGCGCGGAAACCAAGAAGATT 1517
Query 1562 TGGCTGATCGAAAACTTCAGGTTAAACTTCAGTCAAGGTTGGAGGATGATGAAGAAGCCA 1621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1518 TGGCTGATCGAAAACTTCAGGTTAAACTTCAGTCAAGGTTGGAGGAGGATGAAGAAGCCA 1577
Query 1622 AAGCAGCTCTGATGGGAAGAATTCAGCGATTGACAAAGTTAATCTTGGTTTCAACAAAAA 1681
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1578 AAGCAGCTCTGATGGGAAGAATTCAGCGATTGACAAAATTAATCTTGGTTTCAACAAAAA 1637
Query 1682 GTTCACTCCAAGCTGCTTCTGTAAAACCTGACCATATATGGAGGCAAGCTTTTGGAGAGG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GTTCACTCCAAGCTGCTTCTGTAAAACCTGACCATATATGGAGGCAAGCTTTTGGAGAGG 1697
Query 1742 ATGAGCTAGCATACTTGCCCGATAGAAGACGGGAGAACATGGCTGATGATGGTGCTGTAA 1801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1698 ATGAGCTAGCATACTTGCCCGATAGAAGACGGGAGAACATGACTGATGATGGTGCTGTAA 1757
Query 1802 GCACAGTTTCTGAACATTTAAAGGAGCCAAGAGATGGCAATAGTAGTCTGGACGAGATGA 1861
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 GCACAGTTTCTGAACATTTGAAGGAGCCAAGAGATGGCAATAGTAGTCTGGACGAGATGA 1817
Query 1862 CAAAGGACAGGAGAAAG-AACAAGACTCGTGGAATGCTTGGCTGGCTAAAACTGAAAAAA 1920
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 CAAAGGACAGGA-AGAGGAACAAGACTCGTGGAATGCTTGGCTGGCTAAAACTGAAAAAA 1876
Query 1921 TCTGATGGTGTGGCCGGGACATTGCCGACTGATGGTAACCAGAGCCAAGCAAGTGGATCT 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 TCTGATGGTGTGGCCGGGACATTGCCGACTGATGGTAACCAGAGCCAAGCAAGTGGATCT 1936
Query 1981 CCTTCATCTTCCTCCAAGTATACACAAACAAAAACAACTAGAAGAGAAAATGCAGCGGCT 2040
||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 1937 CCTTCATCTTCTTCTAAGTGTACACAAACAAAAACAACCAGAAGAGAAAATGCAGCAGCT 1996
Query 2041 ATTAAGTCTATTCCGGAAAAAACTGTTGCTGGAGACTTGTTCAGTGCTACTGTTGGACCA 2100
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ATCAAGTCTTTTCCAGAAAAAACTGTTGCTGGAGACTTGTTCAGTGCTACTGTTGGACCA 2056
Query 2101 GAAGACTCGTCTCCGACTGGAACTACTATTGCGGATCAAATGGATCTTCTTCACGAGCAG 2160
| |||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2057 GGAGACCCTTATCCGATTGGAACTACTATTGCGGATCAAATGGATCTTCTTCATGAGCAG 2116
Query 2161 ACAAAAATACTTGTTGGAGAAGTAGCCTTACGTACCAGTTCATTAAATCGGCTTTCCGAA 2220
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2117 ACAAAAATACTTGTTGGAGAAGTAGCGTTGCGTACCAGTTCATTAAATCGGCTTTCCGAA 2176
Query 2221 CAAGCTGCTCGCAACCCTGAGGATTTTCACATCAGAGATCAAATACAGAAATTAGAAGAT 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 CAAGCTGCTCGCAACCCTGAGGATTTTCACATCAGAGATCAAATACAGAAATTAGAAGAT 2236
Query 2281 GAAATCAGCGAAAAGAAGGATCAAATACGTGTTCTCGAGCAACAAATTATTGAGATTTTC 2340
|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2237 GAAATCAGTGAAATTAAGGATCAAATACGTGTTCTCGAGCAACGAATTATTGAGATTTTC 2296
Query 2341 GGAATGACTCCCTATGCCTCAGATTCTCTTGGAATGCCCCAGGTTCTGTCAAAGCTCACG 2400
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2297 GGAATGACTCCCTATGCCGCAGATTCTCTTGGAATGTCCCAGGTTCTGTCAAAGCTCACA 2356
Query 2401 ATGCAACTAAATGAGAAAATATTTGAACATGAGATAAAGTCTGCAGACAATAGGATACTT 2460
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2357 ATGCAACTAAATGAGAAAATCTTTGAACATGAGATAAAGTCTGCAGACAATAGGATACTT 2416
Query 2461 CAGGAGCAGCTGCAGATGACTAAATCAGAAAACGCTGAGATGCAAGAGACAATCATTCTA 2520
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417 CAGGAGCAGTTGCAGATGACTAAATCAGAAAACGCTGAGATGCAAGAGACAATCATTCTA 2476
Query 2521 CTAAGACAACAACTAGATTCGTTAGCCGAGAGACAATCAACACAGCAAATCGCAGGAGAC 2580
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 CTAAGACAACAACTAGATTCGTTAGCCGAGAGACAATCAACACAGCAAATCGCAGGAGAT 2536
Query 2581 GAATCATCAGGGAAGAATATTCACAACAGAAATGGTGAAGAGTCAGAAATATACTCTGGA 2640
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 2537 GAATCATCAGGGAAGAATACTCACAACAGAAATTGTGAGGAGTCAGAAATATACTCTGGA 2596
Query 2641 GCAGGAACACCGACCAGCGTGATGAGTTTAAATAGAGTATTTGCTCAGGAAGAGACTAAA 2700
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2597 GCAGGAACACCGACTAGCGTGATGAGTTTAAATAGAGTATTTGCTCAGGAAGAGACTAAA 2656
Query 2701 GAGATCTACAACGAAACAGCTCTCAACTCTCAGGCATTGGAAATAGAGAATCTGAAGAAG 2760
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2657 GAGATCAACAACGAAACAGCTCTCAACTCTCAGGCATTGGAAATAGAGAATCTGAAGAAG 2716
Query 2761 GAGAAGATGCGATTAATTGAGGAAAAAGATGAGCTTGGAAAACTTAACAAGAAACTCACT 2820
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2717 GAGAAGATGAGATTGATTGAGGAAAAAGATGAGCTTGGAAAACTTAACAAGAAACTCACT 2776
Query 2821 GAAGAAGCTTCATATGCTAAAGAATTGGCGTCTGCTGCAGCAGTAGAACTTCAGAATTTG 2880
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2777 GAAGAAGCTTCTTATGCTAAAGAATTGGCGTCTGCCGCAGCAGTAGAACTCCAGAATTTG 2836
Query 2881 GCTGAAGAAGTTACCAGACTCTGCAATGAAAACGCGAAACTCAGCAGGTGAAAAAGTTTC 2940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2837 GCTGAAGAAGTTACCAGACTCTGCAATGAAAACGCGAAACTCAGCAGGTGAAAAAGTTCC 2896
Query 2941 AGGTCTCTCTGTTGTTGCTCGGAGACTCCCAGCTTCAAGATAA-TGCTGCAAAGTAAATC 2999
||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 2897 AGGTCTCTCTGTTGTTGCTCGGAGACTCC-AGATTCAAGATAAATGCTGCAAAGTAAATC 2955
Query 3000 ATCTTCG-TTGACATATAATGCAAATCTCAGACTCTACTTGGAAGGTAATGATGTTGATC 3058
||| | | ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2956 ATCAT-GATTGACCTATAATGCAAATCTCAGACT--ACTTGGAAGGTGTTGATGTTGATC 3012
Query 3059 CATCAAAGGGAACAAGAGATCATGATGCTCCCAAAGGCATTCAATCCAGAAAAAATGGTT 3118
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 3013 CATCAAAGGGATCAAGAGATCATGATGCTCCCAAAGGCA---A-TCCAGAAAAACTGGTT 3068
Query 3119 TGTATTGCTTGGATAGTATTTTGATT--A-CGTCTGATGACAAACACATGATGTAAATA- 3174
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 3069 TGTATTGCTTCGATAGTATTTTGATTCTAACGTCTGATGACAAACACATGATGTAAATAA 3128
Query 3175 TTC------CTCACAAATTTGTTTTCTTGTTCTCAGTGACCACTATTTTTGTATGTTC-T 3227
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 3129 TTGAATATTCTCACAAATTTGTTTTCTTGTTCGCAGTGACCACTATTTTTGTATGTTCGT 3188
Query 3228 -T-AGGTTGAATCAATGATGTTGCAACAAGTTCCATAGTTAGTTTTTCAGCTT 3278
| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3189 CTTAGGTTGAATCGATGATGTTGCAACAAGTTCCATAGTTAGTTTTTCAGCTT 3241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123725169823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5