BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21740.1
Length=2862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472413 jgi|Araly1|472413|fgenesh2_kg.1__2367__AT1G21740.1 4440 0.0
Ahg476915 jgi|Araly1|476915|fgenesh2_kg.2__2045__AT1G77500.1 1081 0.0
Ahg342884 jgi|Araly1|342884|fgenesh1_pg.C_scaffold_3002647 846 0.0
> Ahg472413 jgi|Araly1|472413|fgenesh2_kg.1__2367__AT1G21740.1
Length=2829
Score = 4440 bits (2404), Expect = 0.0
Identities = 2716/2863 (95%), Gaps = 35/2863 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGCGGAGGATCCAAAGTAGATGATCAACCACTTGTGATTCTCTGTAGAGAGAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGCGGAGGATCCAAAGTAGATGATCAACCACTTGTGATTCTCTGTAGAGAGAGG 60
Query 61 AAACAACTCATCAAAGCTGCTTCTCATCATCGTTGTGCTTTAGCCGCTGCTCATCTCTCT 120
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAACTTATCAAAGCTGCGTCTCATCATCGTTGTGCTTTAGCCGCTGCTCATCTCTCT 120
Query 121 TACTTTCAATCTCTCTGTGACGTTGGTGATTCCATTAAACGTTTCGTCGACGAAGAACTC 180
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 TACTTTCAATCTCTCTGTGACGTTGGTGAATCTATTAAACGTTTCGTCGACGAAGAACTT 180
Query 181 GTCCTCGTTGGGActtcttcttcttcttcccctgattctcctgttcttactcttccttcc 240
||| ||||||| ||||||||||||||| ||||||||||||| |||||||| ||||| ||
Sbjct 181 GTCGTCGTTGGTACTTCTTCTTCTTCTACCCCTGATTCTCCGGTTCTTACGCTTCCGTCT 240
Query 241 GACGAAGGGAAGCCACATAAACACAAGATCTCCTCTTCTTCAACCTCTGTTTCGCATTCG 300
|||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 241 GACGAAGGGAAGCCTCATAAACACAAGATCTCGTCTTCTTCAACTTCGGTTTCGCATTCG 300
Query 301 GTTATTGAAGACGAC-GACGAAGGAGAAGGAGAAGATCAGCATTTGCATTTATCATCTGG 359
||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||
Sbjct 301 GTTATTGAAGACGACGGA-GAAGAAGGAGGAGAAGATCAGCATTTGCATTTATCATCTGG 359
Query 360 ATCCGAGTTAGATTCTGGATCGGAATCTGGATCTGATGATTCATTAGGTCATATCCATAT 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 360 ATCCGAGTTAGATTCTGGATCGGAATCTGGATCTGATGGTTCATTAGGTCATATCCACAT 419
Query 420 TGAAACTAGCCCTAAAGTGAAAGAGAAAGAAACACGCTTACCGGAAAATTACCAGCCCGG 479
||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 420 TGAAACTAGCCCTAAAGTGAAGGAGAAAGAAACACGCTTACCGGAAAATT---A---C-- 471
Query 480 TTATCAATCCGGTTATCAATCCGGTTATCAGCCCGGTTTTACGCCGGGATATCAATATCA 539
| | | | ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 472 ----C-A----G----C---CCGGTTATCCGCCTGGTTTTACGCCGGGATATCAATATCA 515
Query 540 ACCGGGTTACTCGGCTGGGTATCAGTATCCGGTTGAAGGATGGGGATTCATGGGAGAGAA 599
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 516 ACCGGGTTACTCTGCTGGGTATCAGTATCCGGTTGAAGGATGGGGATTTATGGGAGAGAA 575
Query 600 TCCGAATTTAAACCCGTACCCGAATCCGAACCAGAATCCGGGAATGTACTTTATGAAGAA 659
|||| ||||||||||||||||||| | || ||||||||||||||| |||||||||||
Sbjct 576 TCCGGATTTAAACCCGTACCCGAA--C---CC-GAATCCGGGAATGTATTTTATGAAGAA 629
Query 660 GTCTGTGCAACCGTCACGACCGGTAGTGTTTCAGCCGGAGAATCATAGAGTGGAGAATGG 719
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GTCTGCGCCACCGTCACGACCGGTAGTGTTTCAGCCGGAGAATCATAGAGTGGAGAATGG 689
Query 720 GCAATGGTTGCCGGAGAATGGAGTTGGGTATTCTAATTATTACCCAGGAAACGCTAATAC 779
|||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||
Sbjct 690 GCAATGGTTGCCGGAGAATGGATTTGGGTACTCTAATTATTTTCCAGGAAACGCGAATAC 749
Query 780 TGGGTATTTTGGTTACCCGGAGCAACGTAGAGAGCCACCGTCTCCGGTGAGGCCGACTCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 750 TGGGTATTTTGGTTACCCGGAGCAACGTAGAGAGCCACCGTCTCCGGTGAGACCGACTCC 809
Query 840 AGCACCTCCGTCTCCGCCTAGGATTTCAAGTTGGGATTTTTTGAATGTGTTTGATACTTA 899
||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 810 AGCGCCTCCGTCTCCGCCTAAGATCTCAAGTTGGGATTTTTTGAATGTGTTTGATACTTA 869
Query 900 TGATTATAATAGAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGCTGGGTTTTTTCCAGC 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 870 TGATTATAATAGAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGTTGGGTTTTCTCCGGC 929
Query 960 CATGGGTGGAGGTAAGTCGAATTCAAGTAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGA 1019
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 CATGGGTGGAGGTAAGTCAAATTCAAGCAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGA 989
Query 1020 AGGGATTCCTGAGTTGGAAGAAGAAACAGAGCAAGAAGTTATCTTTGGGCAGACGTTTAA 1079
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 990 AGGGATTCCTGAGTTGGAAGAAGAAACAGAGCAAGAAGTTATCATTGGGCAAACGTTTAA 1049
Query 1080 ACATATGAAGAGAAAAGGCATTGAGAAGGTGAAAGAACAACACAGACAGGAGAATGAGAT 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1050 ACATATGAAGAGAAAAGGCATTGAGAAGGTGAAAGAACAACACAGACCGGAGAATGAGAT 1109
Query 1140 TCACGAGAGAAAGATCAAGAAACGAGGAGATTCAGGTGAAGGAACTTCAAGGGCAGTGCC 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1110 TCACGAGAGAAAGATCAAGAAACGAGGAGATTCAGGTGAAGGAACATCAAGGGCAGTGCC 1169
Query 1200 TGTGGTAGAAAGGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCGTCGTTTTCGAG 1259
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1170 TATGGTAGAAAGGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCTTCGTTTTCGAG 1229
Query 1260 CAGTGAAGAAGAGTCGGAGTTTCATCATGTTAATGATGGAGAAGGGAAGAGTAGCAGTAA 1319
||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1230 TAGTGAAGAAGAATCTGAGTTTCATCATGTTAATGACGGAGAAGGAAAGAGTAGCAGTAA 1289
Query 1320 TGATTTAGGTGGGCATGAGACGGTTGCTACTAAGAGTGTTGGAGAAGTAGAAGAAGAATA 1379
||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1290 TGATTTAAGTGGGCATGAGACAGTTGCCACTAAGAGTGTTGGAGAAGTAGAAGAAGAATA 1349
Query 1380 TGTGAGGAAGAAAGGAGTTAGCTTTGAGTTGGATGAAAATGTAACTACTTCTTTTGATGT 1439
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1350 TGTGAGGAAGAAAGGAGTGAGCTTTGAGTTGGATGAAAATGCAACTACTTCTTTTGATGT 1409
Query 1440 TGAATCTTCCAAGATTAGTAGTCTATCTGCATTGTCGGTTCATGCCACTAGAGATCTTAG 1499
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1410 TGAATCTTCCAAAATAAGTAGTCTGTCTGCATTGTCGGTTCATGCCACTAGAGATCTCAG 1469
Query 1500 AGAAGTTGTGAAGGAGATCAAGAGTGAGTTTGAGGTTGCTTCTTCACATGGGAAGGAAGT 1559
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AGAAGTTGTGAAAGAGATCAAGAGTGAGTTTGAGGTTGCTTCTTCACATGGGAAGGAAGT 1529
Query 1560 GGCTGTGTTGCTTGAGGTTAGCAAGTTGCCTTATCAGCAGAAAAGTTCGGGGCTCAAAGT 1619
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1530 GGCTGTGTTGCTTGAGGTTAGCAAGTTGCCTTATCAGCAGAAAAGCTCGGGGCTCAAAGT 1589
Query 1620 CATCTTCTCCCGGATCATGTATCTGGTTGCACCATCCACAGTTTCATCGCGCTCTCAGCC 1679
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1590 TATCTTCTCCCGGATCATGTATCTGGTAGCGCCATCCACAGTGTCATCGCGCTCTCAGCC 1649
Query 1680 TCAACCGTCAATACGTTTAACATCTAGGATATTGAAAATTGCAAAATCATACAATGGTCA 1739
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 TCAACCGTCAATACGGTTAACATCTAGGATATTGAAAATTGCAAAATCATACAATGGTCA 1709
Query 1740 GGATGTTAGAGAAGGCTTAACTGGGAACCTCTCAGCAACCTTGGAGCAACTCTATGCTTG 1799
|||| | |||||||||||| |||| |||||||| |||||||||||||||||||||| ||
Sbjct 1710 GGATATCAGAGAAGGCTTATCTGGAAACCTCTCTTCAACCTTGGAGCAACTCTATGCCTG 1769
Query 1800 GGAAAAGAAACTGTACAAAGAAGTCAAGGATGAAGAGAAGCTTCGTGTTGTCTATGAAGA 1859
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GGAAAAGAAACTGTATAAAGAAGTCAAGGATGAAGAGAAGCTTCGTGTTGTCTATGAAGA 1829
Query 1860 AAAGTGCAGAACACTGAAAAAACTGGATAGTCTTGGTGCGGAATCTAGCAAGATTGATAC 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 AAAGTGCAGAACACTGAAAAAACTGGATAGTCTTGGTGCGGAATCTAGCAAGATTGATAC 1889
Query 1920 TACTCGAGCAGCCATTAGAAAGCTGCTAACCAAACTCGACGTCTGTATAAGATCTGTTGA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 TACTCGAGCAGCCATTAGAAAGCTGCTAACCAAACTCGACGTCTGTATAAGATCTGTTGA 1949
Query 1980 TTCCATTTCCAGCAGGATACATAAACTGAGAGACGAAGAATTACAGCCTCAACTAACACA 2039
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1950 TTCCATTTCCAGCAGGATACATAAACTGAGAGACGAAGAATTACAGCCGCAACTCACTCA 2009
Query 2040 ATTGATTCACGGGTTGATAAGAATGTGGAGATCAATGCTCAAGTGCCACCAGAAGCAGTT 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 ATTGATTCACGGGTTGATAAGAATGTGGAGATCAATGCTCAAGTGCCACCAGAAGCAGTT 2069
Query 2100 CCAGGCAATCATGGAGAGCAAGGTTCGATCTCTCAGGGCAAACACCGGCTTACAAAGAGA 2159
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 CCAGGCAATTATGGAGAGCAAGGTTCGATCTCTCAGGGCAAACACCGGCTTACAAAGAGA 2129
Query 2160 CTCCGGTTTGAAAGCTATTCTTGATTTGGAGATGGAGCTACGAGAATGGTGCATTAGCTT 2219
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2130 CTCTGGTCTGAAAGCTATTCTTGATCTGGAGATGGAGCTACGAGAATGGTGCATTAGCTT 2189
Query 2220 CAACGACTGGGTCAATACTCAGAAATCATACGTGGAGTCTCTAAATGGATGGCTCTCAAG 2279
|||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 2190 CAACCATTGGGTCAATACTCAGAAATTATATGTGGAGTCTCTAAATGGATGGCTCTCAAG 2249
Query 2280 ATGTCTTCACTATGAACCTGAATCAACGGAGGACGGAATTGCCCCTTTCTCTCCTAGCCG 2339
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2250 ATGTCTTCACTATGAACCTGAATCAACAGAGGATGGAATTGCCCCTTTCTCTCCTAGCCG 2309
Query 2340 TGTTGGAGCTCCACAGGTTTTCGTTATATGCAAAGATTGGCAAGAAGCAATGGCGAGAAT 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2310 TGTTGGAGCTCCACAGGTTTTCGTTATATGCAAAGATTGGCAAGAAGCAATGGCGAGAAT 2369
Query 2400 CTCTGGAGAGAACGTTTCAAACGCAATGCAAGGCTTTGCCTCGAGTCTGCATGAACTATG 2459
|||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||
Sbjct 2370 CTCTGGAGAGAACGTTTCAAACGCTATGCAAGGCTTTGCTTCGAGCCTACATGATTTATG 2429
Query 2460 GGAGAGACAAGATGAGGAGCAAAGGCAGAGAGTGAAAGCAGAGTATGTGTCACACGATTT 2519
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 2430 GGAGAGACAAGATGAGGAGCAAAGACAGAGAGTGAAAGCAGAGTATGTCTCACATGATTT 2489
Query 2520 CGAGAAACGGTTGAATGATCTTCGGATGGAGAGGGCGAGAGTGAGAATGAGAAACGATCA 2579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2490 TGAGAAACGGTTGAATGATCTTCGGATGGAGAGGGCGAGAGTGAGAATGAGAAACGATCA 2549
Query 2580 GCTACAAGACGGTGCATCAGAGAAAAGCGTGGTCTTGTCCGAGAGCGGGATCTCGGCGTT 2639
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2550 GCTACAAGACGGTGCATCAGAGAAAAGCGTGGTCTTGTCTGAGAGCGGGATATCGGCGTT 2609
Query 2640 GGATGATTTGAAAGTGGACTTGGATTCAATGAGGAAGAAGCTAGAAGAAGAAAGAGCAAG 2699
|||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 2610 GGATGATTTGAAGGTGGATTTAGATTCTATGAGGAAGAAGCTAGAAGAAGAGAGAGCAAG 2669
Query 2700 ACACAAGGAAACAATTAAACTTGTGAACAATGCAGCTTCAAGCAGCTTACAAGCTGGTTT 2759
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2670 ACACAAGGAAACAATTAAACTTGTGAACAATGCAGCTTCGAGCAGCTTACAAGCTGGTTT 2729
Query 2760 AGTACCAATCTTTGAGGCTTTGGGGAATTTCACTTCACAAGTTGTGAAAGCTCATGAAGA 2819
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 AGTACCAATCTTTGAGGCCTTGGGGAATTTCACTTCACAAGTTGTGAAAGCTCATGAAGA 2789
Query 2820 TGTTAGGTTTCAACAACAACAACAGCCTGAGTCTGAAGATTGA 2862
||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2790 TGTTAGGTTTCAACAACAACA---GCCTCAGTCTGAAGATTGA 2829
> Ahg476915 jgi|Araly1|476915|fgenesh2_kg.2__2045__AT1G77500.1
Length=3016
Score = 1081 bits (585), Expect = 0.0
Identities = 1098/1338 (82%), Gaps = 65/1338 (5%)
Strand=Plus/Plus
Query 1177 GAAGGAACTTCAAGGGCAGTGCCTGTGGTAGAA-AGGGCTACGGAGAGCTCTTTTGG-TT 1234
|||| ||||| |||| |||||| || |||| | | | || |||||||| |||| ||
Sbjct 1236 GAAGAAACTTTGAGGGAAGTGCCAATGCCAGAACAAGTC-ACTGAGAGCTC-CTTGGATT 1293
Query 1235 CAAAGACTGTGTCGTCGTTTTCGA-GCAGTGAAGAAGAGTCGGAGTTTCATC-ATGTTAA 1292
|| |||| | ||||||||||| | | ||||| | || ||||||||||| | |||||||
Sbjct 1294 CAGAGACAATTTCGTCGTTTTC-AGGAAGTGATGTGGAATCGGAGTTTCA-CTATGTTAA 1351
Query 1293 TGATGGAGAAGGGAAGAGTAGCAGTAATGATTTAGGT-GGGCATGAGACGGTTGCTACTA 1351
|| ||| ||||| ||||| |||| | | | || | | | || | ||||| | || |
Sbjct 1352 TGGTGGTGAAGGAAAGAGCAGCA-TTA-G-TTCA-ATCAGTCACGGGACGG--G-GACAA 1404
Query 1352 AGAGTGTTG-GAGAAGTAGAAGAAGAATATGTGAGGAAGAAAGGAGTTAGCTTTGAGTTG 1410
|||| | | |||||||||||||| | |||| ||||||||||||||| ||||||||||||
Sbjct 1405 AGAG-CTCGAGAGAAGTAGAAGAACAGTATGGGAGGAAGAAAGGAGTGAGCTTTGAGTTG 1463
Query 1411 GATGA-A-AATGTA--ACTACTTCTTTTGATGTTGAATCTTCCAAGATTAGTAGTC-TAT 1465
|| || | || | | ||| | |||||||||||||||||||||||||| ||||| | |||
Sbjct 1464 GAGGAGACAACG-AGCACTTCGTCTTTTGATGTTGAATCTTCCAAGATAAGTAG-CTTAT 1521
Query 1466 -CTGCATTGTCGGTTCATGCCACTAGAGATCTTAGAGAAGTTGTGAAGGAGATCAAGAGT 1524
| | |||||| | ||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 1522 CCAG-TTTGTCGATCCATGCCACTAGGGATCTCAGAGAAGTTGTCAAGGAGATAAAGAGT 1580
Query 1525 GAGTTTGAGGTTGCTTCTTCACATG-GG-AAGGAAGTGGCTGTGTTGCTTGAGGTTAGCA 1582
||||| |||||||||||||| | || || ||||| || ||| |||| ||||||||| |||
Sbjct 1581 GAGTTCGAGGTTGCTTCTTC-C-TGTGGTAAGGAGGTTGCTTTGTTACTTGAGGTTGGCA 1638
Query 1583 AGTTGCCTTATCAGCA-GAAAA-GTTCGGGGCTCAAAGTCATCTTCTCCCGGATCATGTA 1640
|||||||||||||||| |||| | |||| | ||||| ||||| ||| ||||||||||
Sbjct 1639 AGTTGCCTTATCAGCATAAAAACAAT-GGGG-TTAAAGTTATCTTATCCAGGATCATGTA 1696
Query 1641 TCTGGTTGCACCATCCACA-GTTTCATCGCGCTCTCAGCCTCA-ACCGTCAATACGTTTA 1698
|||||| |||||||||||| | ||||||| ||||||||| || || ||||||||||||
Sbjct 1697 TCTGGTAGCACCATCCACACG-GTCATCGCACTCTCAGCC-CAGACTATCAATACGTTTA 1754
Query 1699 ACATCTAGGATATTGAAAATTGCAAAATCATACAATGGTCAGGATGTTAGA-GAAGGCTT 1757
|||||||||| | |||||| || ||| |||||||||| || ||||||| | | ||||||
Sbjct 1755 ACATCTAGGACACGGAAAATGGCGAAAGCATACAATGGACAAGATGTTA-ATGGAGGCTT 1813
Query 1758 -AACTGGGAACCTCTCAGCAACCTTGGAGCAACTCTATGCTTGGGAAAAGAAACTGTACA 1816
|| ||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 1814 CAA-TGGAAACCTCTCATCAACCTTGGAGAAACTGTATGCATGGGAAAAGAAACTGTACA 1872
Query 1817 AAGAAGTCAAGGATGAAGAGAAGCTTCGTGTTGTCTATGAAGAAAAGTGCAGAACACTGA 1876
||||||||||||| ||||| ||||| |||| |||||||||| |||||||| | ||| |
Sbjct 1873 AAGAAGTCAAGGACGAAGAAAAGCTGCGTGCCATCTATGAAGAGAAGTGCAGGAGACTAA 1932
Query 1877 AAAAACTGGATAGTCTTGGTGCGGAATCTAGCAAGATTGATACTACTCGAGCAGCCATTA 1936
||||| ||||||||| ||| || ||||||| |||||| ||| ||||||| ||||||||||
Sbjct 1933 AAAAAATGGATAGTCATGGAGCAGAATCTATCAAGATCGATGCTACTCGGGCAGCCATTA 1992
Query 1937 GAAAGCTGCTAACCAAACTCGACGTCTGTATAAGATCTGTTGATTCCATTTCCAGCAGGA 1996
| ||||| || |||||| |||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 1993 GGAAGCTTCTGACCAAAATCGATGTCTGTATAAGATCTGTTGATTCTATTTCCAGCAGAA 2052
Query 1997 TACATAAACTGAGAGACGAAGAATTACAGCCTCAACTAACACAATTGATTCACGGGTTGA 2056
| |||||||| ||||| |||||||| ||||| ||||| ||||| || |||||||||||||
Sbjct 2053 TCCATAAACTTAGAGATGAAGAATTGCAGCCACAACTGACACAGTTAATTCACGGGTTGA 2112
Query 2057 TAAGAATGTGGAGATCAATGCTCAAGTGCCACCAGAAGCAGTTCCAGGCAATCATGGAGA 2116
||||||||||||| |||||||| | |||||||||||| ||||| ||||| ||||||||||
Sbjct 2113 TAAGAATGTGGAGGTCAATGCTGAGGTGCCACCAGAAACAGTTTCAGGCGATCATGGAGA 2172
Query 2117 GCAAGGTTCGATCTCTCAGGGCAAACACCGGCTTACAAAGAGACTCCGGTTTGAAAGCTA 2176
|||||||||||||||| | ||| ||||| |||||||| |||||| || | || ||| |
Sbjct 2173 GCAAGGTTCGATCTCTAAAGGCGAACACAACCTTACAAAAAGACTCTGGCTCGACAGCAA 2232
Query 2177 TTCTTGAT-TTGGAGATGGAGCT-ACGAGAATGGTGCATTAGCTTCAACGACTGGGTCAA 2234
|||||||| ||| |||| ||||| | |||||||||||| ||||||||||||||||||||
Sbjct 2233 TTCTTGATCTTG-AGATAGAGCTTA-GAGAATGGTGCAGCAGCTTCAACGACTGGGTCAA 2290
Query 2235 TA-CTCAGAAATCATACGTGGAGTCTC-TAAATGGATGGCTCTC-AAGATGTCTTCACTA 2291
| | ||||||||||| || ||| || ||| || |||||||| || ||| ||||||||
Sbjct 2291 CAGC-CAGAAATCATATGTCCAGT-TCCTAAGCGGCTGGCTCTCGAA-ATGCCTTCACTA 2347
Query 2292 TGAACCTGAATCAACGGAGGACGGAATTGCCCCTTTCTCTCCTAGCC-G-T-GTTGGAGC 2348
|||||| || |||| || |||||||| || |||||||||||||||| | | | || | |
Sbjct 2348 TGAACCAGAGGCAACCGATGACGGAATAGCTCCTTTCTCTCCTAGCCAGATCGGTGCACC 2407
Query 2349 TCCACAGGTTT-TCGTTATATGCAAAGATTGGCAAGAAGCAATG-GCGAGAATCTCTGGA 2406
|| || ||| || ||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 2408 GCC-CATATTTATC---ATATGCAAAGATTGGCAAGAAGCAATGTGT-AGAATATCTGGA 2462
Query 2407 GAGAACGTTTCAAACGCAATGCAAGGCTTTGCCTCGAGTCTGCATGA-ACTATGGGAGAG 2465
||||| || | || ||||||||||| ||||| || ||||| || || | |||||||||
Sbjct 2463 GAGAATGTGACCAATGCAATGCAAGGTTTTGCTTCAAGTCTACACGAGA-TATGGGAGAA 2521
Query 2466 ACAAGATGAGGAGCAAAG 2483
|||||| || ||||||||
Sbjct 2522 ACAAGAAGAAGAGCAAAG 2539
> Ahg342884 jgi|Araly1|342884|fgenesh1_pg.C_scaffold_3002647
Length=666
Score = 846 bits (458), Expect = 0.0
Identities = 510/535 (95%), Gaps = 3/535 (1%)
Strand=Plus/Plus
Query 911 GAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGCTGGGTTTTTTCCAGCCATGGGTGGAG 970
||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 89 GAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGTTGGGTTTTCTCCGGCCATGGGTGGAG 148
Query 971 GTAAGTCGAATTCAAGTAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGAAGGGATTCCTG 1030
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTAAGTCAAATTCAAGCAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGAAGGGATTCCTG 208
Query 1031 AGTTGGAAGAAGAAACAGAGCAAGAAGTTATCTTTGGGCAGACGTTTAAACATATGAAGA 1090
|||||||||||||||||||||||||||| || | || || |||||||||||||||||||
Sbjct 209 AGTTGGAAGAAGAAACAGAGCAAGAAGTGAT-T--GGCCAAACGTTTAAACATATGAAGA 265
Query 1091 GAAAAGGCATTGAGAAGGTGAAAGAACAACACAGACAGGAGAATGAGATTCACGAGAGAA 1150
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 266 GGAAAGGCATTGAGAAGGTGAAAGAACAACACAGACAGGAGAATGAGATTCACGACAGAA 325
Query 1151 AGATCAAGAAACGAGGAGATTCAGGTGAAGGAACTTCAAGGGCAGTGCCTGTGGTAGAAA 1210
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 326 AGATCAAGAAACGAGGAGATTCAGGTGAAGGAACATCAAGGGCAGTGCCTATGGTAGAAA 385
Query 1211 GGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCGTCGTTTTCGAGCAGTGAAGAAG 1270
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 386 GGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCTTCGTTTTCGAGTAGTGAAGAAG 445
Query 1271 AGTCGGAGTTTCATCATGTTAATGATGGAGAAGGGAAGAGTAGCAGTAATGATTTAGGTG 1330
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 446 AGTCTGAGTTTCATCATGTTAATGACGGAGAAGGAAAGAGTAGCAGTAATGATTTAAGTG 505
Query 1331 GGCATGAGACGGTTGCTACTAAGAGTGTTGGAGAAGTAGAAGAAGAATATGTGAGGAAGA 1390
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGCATGAGACAGTTGCTACTAAGAGTGTTGGAGAAGTAGAAGAAGAATATGTGAGGAAGA 565
Query 1391 AAGGAGTTAGCTTTGAGTTGGATGAAAATGTAACTACTTCTTTTGATGTTGAATC 1445
||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 566 AAGGAGTGAGCTTTGAGTTGGATGAAAATGCAACTACTTCTTTTGATGTTAAATC 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108023934820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5