BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21750.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921160 jgi|Araly1|921160|scaffold_102441.1 2566 0.0
Ahg476916 jgi|Araly1|476916|fgenesh2_kg.2__2046__AT1G77510.1 1437 0.0
> Ahg921160 jgi|Araly1|921160|scaffold_102441.1
Length=1551
Score = 2566 bits (1389), Expect = 0.0
Identities = 1500/1554 (97%), Gaps = 5/1554 (0%)
Strand=Plus/Plus
Query 42 TTGTTAGAGAGAAAGAGAGAGCGATAATGGCGATGAGGGGCTTCACGTTGTTTTCGATCC 101
||||||||||| || ||||| ||||||||||||||||| | ||| |||||||||||||||
Sbjct 1 TTGTTAGAGAG-AA-AGAGACCGATAATGGCGATGAGGCGATTCGCGTTGTTTTCGATCC 58
Query 102 TTGTGTTGTCTTTGTGCGCTTCGTCTATCAGAAGCGAAGAGACGGAGACGAAGGAGTTCG 161
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 59 TTGTGTTGTCGTTGTTCGCTTCTTCTATCAGAAGCGAAGAGACGGAGACGAAGGAGTTCG 118
Query 162 TGTTGACCTTGGATCACACTAACTTCACCGATACCATCAACAAACACGATTTCATCGTCG 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTTGACCTTGGATCACACTAACTTCACCGATACCATCAACAAACACGATTTCATCGTCG 178
Query 222 TCGAGTTCTACGCCCCATGGTGTGGACACTGCAAGCAGCTTGCTCCTGAGTATGAGAAGG 281
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCGAGTTCTACGCCCCATGGTGTGGACACTGCAAGCAGCTTGCTCCTGAGTACGAGAAGG 238
Query 282 CTGCGTCAGCTTTGAGCAGTAACGTCCCACCAGTGGTTCTTGCTAAGATTGATGCCAGTG 341
||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 239 CTGCGTCAGAGTTGAGCAGTAACGTCCCTCCGGTTGTTCTTGCTAAGATTGATGCAAGTG 298
Query 342 AGGAAACAAACAGAGAATTTGCAACTCAATACGAGGTTCAGGGTTTCCCAACAATCAAGA 401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 AGGAAACAAACAGAGAATTTGCAACCCAATACGAGGTTCAGGGTTTCCCAACAATCAAGA 358
Query 402 TTTTCAGAAACGGAGG-AAAGGCTGTTCAAGAATACAACGGACCTCGTGAAGCTGAGGGT 460
|||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct 359 TTTTCAGAAACGGAGGTAAA-GCTGTACAAGAATACAATGGACCTCGTGAAGCTGACGGC 417
Query 461 ATTGTTACTTACTTGAAGAAACAAAGTGGACCTGCTTCTGCTGAAATTAAGTCAGCTGAT 520
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 ATTGTTACTTACTTGAAGAAACAAAGTGGACCTGCTTCAGCTGAAATTAAGTCAGCTGAT 477
Query 521 GATGCTTCTGAGGTTGTTAGTGACAAGAAGGTTGTTGTGGTTGGGATTTTCCCTAAACTA 580
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATGCTACTGAGGTTGTTGGTGACAAGAAGGTTGTTGTGGTTGGGATTTTCCCTAAACTA 537
Query 581 TCTGGCTCCGAGTTTGATTCTTTCATGGCCATTGCTGAGAAATTGCGCTCTGAGTTAGAT 640
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCTGGCTCTGAGTTTGATTCTTTCATGGCCATTGCTGAGAAATTGCGCTCTGAGTTAGAT 597
Query 641 TTCGCACATACCTCGGATGCCAAGCTTCTTCCCCGTGGAGAGTCATCTGTAACAGGACCT 700
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCGCACACACCTCGGATGCTAAACTTCTTCCCCGTGGAGAGTCATCTGTAACAGGACCT 657
Query 701 GTGGTCAGGCTATTCAAACCCTTTGATGAACAATTTGTTGATTCCAAGGATTTCGATGGT 760
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GTAGTCAGGCTGTTCAAACCCTTTGATGAACAGTTTGTTGATTCCAAGGATTTCGATGGT 717
Query 761 GAAGCTCTGGAGAAATTTGTCAAAGAATCCAGCATTCCACTTATCACCGTCTTTGACAAA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAAGCTCTGGAGAAATTTGTCAAAGAATCCAGCATTCCACTTATCACCGTCTTTGACAAA 777
Query 821 GATCCAAACAACCACCCATATGTTATCAAGTTCTTTGAAAGCACTAATACCAAGGCGATG 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 GATCCAAACAACCACCCATATGTTATCAAGTTCTTTGAAAGCACTAATACCAAGGCAATG 837
Query 881 TTGTTCATTAACTTCACTGGAGAAGGAGCTGAGTCTCTTAAATCAAAGTACCGTGAAGTT 940
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TTGTTCATGAACTTCACTGGAGAAGGAGCCGAGTCTCTTAAATCAAAGTACCGTGAAGTT 897
Query 941 GCTACATCCAACAAGGGACAGGGTCTTAGCTTCCTTCTAGGTGATGCTGAGAACAGCCAA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCTACATCCAACAAGGGACAGGGTCTTAGCTTCCTTCTAGGTGATGCTGAGAACAGCCAA 957
Query 1001 GGTGCATTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCTCTCATCATCATCCAGACT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGTGCATTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCTCTCATCATCATCCAGACT 1017
Query 1061 GCTGACGACAAGAAATACCTGAAAACAAATGTTGAGGTTGACCAGATTGAATCATGGGTC 1120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 GCTGACGACAAGAAATACCTGAAAACAAATGTGGAGGTTGACCAGATTGAATCATGGGTT 1077
Query 1121 AAGGACTTCAAGGATGGAAAAATTGCTCCCCACAAAAAATCTCAACCTATCCCAGCCGAA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGGACTTCAAGGATGGAAAAATTGCTCCCCACAAAAAATCTCAACCTATCCCAGCCGAA 1137
Query 1181 AACAACGAGCCAGTGAAGGTTGTTGTTTCTGACAGCCTTGACGACATTGTCTTAAACTCT 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AACAACGAGCCAGTGAAGGTTGTTGTTTCTGACAGCCTTGACGACATTGTCTTAAACTCT 1197
Query 1241 GGAAAGAACGTTTTGCTTGAATTCTATGCTCCATGGTGTGGACACTGCCAAAAGCTTGCT 1300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGAAAGAACGTCTTGCTTGAATTCTATGCTCCATGGTGTGGACACTGCCAAAAGCTTGCT 1257
Query 1301 CCAATCTTGGACGAAGTTGCTGTGTCGTACCAAAGCGACTCAAGTGTAGTCATCGCTAAG 1360
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1258 CCAATCTTGGACGAAGTCGCTGTGTCGTACCAAAGCGACCCAAGTGTAGTCATAGCTAAG 1317
Query 1361 CTAGATGCAACCGCAAACGACTTCCCAAAAGATACCTTTGATGTGAAGGGATTCCCGACC 1420
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1318 CTAGATGCAACCGCAAACGACTTCCCACGTGATACCTTTGATGTGAAGGGCTTCCCGACC 1377
Query 1421 ATTTACTTCAAATCAGCGAGCGGAAACGTTGTGGTTTACGAAGGAGACAGGACAAAGGAA 1480
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1378 ATTTACTTCAAAGCAGCAAGCGGAAACATTGTGGTTTACGAAGGAGACAGGACAAAGGAA 1437
Query 1481 GATTTCATAAGCTTCGTCGACAAGAACAAGGACACAGTTGGAGAGCCTAAGAAGGAGGAA 1540
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 GATTTCATAAGCTTCATCGACAAGAACAAGGACACAGTTGGAGAGGCTAAGAAGGAGGAA 1497
Query 1541 GAGACAACTGAGGAAGTCAAGGATGAGCTCTGAAAA-GAGAAGTGTGTTGTGTC 1593
||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1498 GAGACAACTGAGGAAGTCAAGGACGAGCTCTGAAAAAGAGAAGTGTGTTGAGTC 1551
> Ahg476916 jgi|Araly1|476916|fgenesh2_kg.2__2046__AT1G77510.1
Length=1749
Score = 1437 bits (778), Expect = 0.0
Identities = 1254/1481 (85%), Gaps = 44/1481 (3%)
Strand=Plus/Plus
Query 49 AGAGAA-AGAGAGAGCG---ATAATGGCGATGAGGGGCTTCACGTTG-TTTTCGATCC-- 101
||| || |||||||||| ||||||||||| | ||| ||| || || ||||||||||
Sbjct 66 AGAAAAGAGAGAGAGCGATAATAATGGCGATTAAGGGTTTCGCG-TGTTTTTCGATCCTT 124
Query 102 TT-GTGTTGTCTTTGTGCGCTTCGTCTATCAGAAGCGAAGAGACGGAGACGAAGGAGTTC 160
|| |||| ||| ||| |||||| || || |||||| ||| | |||||||||| ||
Sbjct 125 TTATTGTTATCTCTGTTCGCTTCCTCCATAAGAAGC---GAG-C--AGACGAAGGAATTT 178
Query 161 GTGTTGACCT-TGGATCACACTAACTTCACCGATACCATCAACAAACACGATTTCATCGT 219
|| |||| || | |||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 179 GTCTTGA-CTCTCGATCACTCTAACTTCACCGAAACCATCACCAAACACGATTTCATCGT 237
Query 220 CGTCGAGTTCTACGCCCCATGGTGTGGACACTGCAAGCAGCTTGCTCCTGAGTATGAGAA 279
|||||||||||||||||| |||||||| |||||| || |||||||||||||||| |||||
Sbjct 238 CGTCGAGTTCTACGCCCCTTGGTGTGGTCACTGCCAGAAGCTTGCTCCTGAGTACGAGAA 297
Query 280 GGCTGCGTCAGCTTTGAGCAGTAACGTCCCACCAGTGGTTCTTGCTAAGATTGATGCCAG 339
|||||| |||| ||||||||| | |||||| | | ||| || ||||||||||| ||
Sbjct 298 GGCTGCATCAGAGTTGAGCAGTCATAACCCACCTCTCGCTCTCGCCAAGATTGATGCTAG 357
Query 340 TGAGGAAACAAACAGAGAATTTGCAA-CTCAATACGAGGTTCAGGGTTTCCCAACAATCA 398
| | ||| |||||| || |||||||| | ||||| || ||||||||||||| || | |
Sbjct 358 TCAAGAAGCAAACAAAGGATTTGCAAACG-AATACAAGATTCAGGGTTTCCCCACTCTTA 416
Query 399 AGATTTTCAGAAACGGAGG-AAAGGCTGTTCAAGAATACAACGGACCTCGTGAAGCTGAG 457
||||||| ||||| ||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct 417 AGATTTTGAGAAATGGAGGGAAAT-CAGTTCAAGATTACAACGGACCTCGTGAAGCTGAG 475
Query 458 GGTATTGTTACTTACTTGAAGAAACAAAGTGGACCTGCTTCTGCTGAAATTAAGTCAGCT 517
|||||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct 476 GGTATTGTCACTTATTTGAAGAAGCAAAGTGGTCCTGCTTCTGTTGAAATTAAGTCAGCT 535
Query 518 GATGATGCTTCTGAGGTTGTTAGTGACAAGAAGGTTGTTG-TGGTTGGGATT-TTCCCTA 575
||| ||| ||||| |||| |||| ||||| ||||||| || |||| | | |||||||
Sbjct 536 GATTCTGCCGCTGAGATTGTGGGTGAAAAGAATGTTGTTGCTG-TTGG-AGTGTTCCCTA 593
Query 576 AACTATCTGGCTCCGAGTTTGATTCTTTCATGGCCATTGCTGAGAAATTGCGCT-CTGAG 634
|| |||||||| ||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 594 AATTATCTGGCGAGGAGTTTGATTCTTTCATGGCCCTTGCTGAGAAATTGCG-TGCTGAC 652
Query 635 T-TAGATTTCGCACATACCTCGGATGCCAAGCTTCTTCCCCGTGGAGAGTCATCTGTAAC 693
| | ||||||||||| || | |||||||||| ||||||| ||||||||||| | || ||
Sbjct 653 TAT-GATTTCGCACACACTTTGGATGCCAAGGTTCTTCCTCGTGGAGAGTC-TGTGGAA- 709
Query 694 AGGACCTGTGGTCAGGCTATTCAAACCCTTTGATGAACAATTTGTTGATTCCAAGGATTT 753
|||||||| || ||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct 710 -GGACCTGTAGTGAGGCTATTCAAGCCTTTTGATGAGTTGTTTGTTGATTCCAAGGACTT 768
Query 754 CGATGGTGAAGCTCTGGAGAAATTTGTCAAAGAATCCAGCATTCCACTTATCACCGTCTT 813
| |||| |||||||| |||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 769 CAATGGGGAAGCTCTAGAGAAATTTGTCAAAGAATCAAGTATTCCACTTGTCACCGTCTT 828
Query 814 TGACAAAGATCCAAACAACCACCCATATGTTATCAAGTTCTTTGAAAGCACTAATACCAA 873
||||| |||||||||||||||||||||||| |||| |||||||| ||| || || ||
Sbjct 829 TGACAGTGATCCAAACAACCACCCATATGTTGTCAAATTCTTTGACAGCCCTGCCACTAA 888
Query 874 GGCGATGTTGTTCATTAACTTCACTGGAG-AAGGAGCTGAGTCTCTTAAATCAAAGTACC 932
||| ||| ||||| |||||||||| |||| || |||||| ||||| |||||||||||||
Sbjct 889 GGCAATGATGTTCGTTAACTTCACCGGAGCAAC-AGCTGAATCTCTAAAATCAAAGTACC 947
Query 933 GTGAAGTTGCTACATCCAACAAGGGACAGGGTCTTAGC-TTCCTTCTAGGTGATGCTGAG 991
||||||| |||||||||||||| || || |||||| || |||||| | ||||||||||||
Sbjct 948 GTGAAGTAGCTACATCCAACAAAGGTCAAGGTCTT-GCCTTCCTTGTCGGTGATGCTGAG 1006
Query 992 AACAGCCAAGGTGCATTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCTCTCATCATC 1051
| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1007 AGCAGCCAAGGCGCTTTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCCCTCATCATC 1066
Query 1052 ATCCAGACTGCTGACGACAAGAAATACCTGAAAACAAATGTTGAGGTTGACCAGATTGAA 1111
|||||||| | || ||||||| || ||||| | || |||||||||||||||||||||
Sbjct 1067 ATCCAGACCCCAGATAACAAGAAGTATTTGAAAGCCAACGTTGAGGTTGACCAGATTGAA 1126
Query 1112 TCATGGGTCAAGGACTTCAAGGATGGAAAAATTGCTC-CCCACAAAAAATCTCAACCTAT 1170
|||||||||||||||||| |||| |||||| |||| | ||||||||||||||||||||||
Sbjct 1127 TCATGGGTCAAGGACTTCCAGGACGGAAAAGTTGC-CGCCCACAAAAAATCTCAACCTAT 1185
Query 1171 CCCAGCCGAAAACAACGAGCCAGTGAAGGTTGTTGTTTCTGACAGCCTTGACGACATTGT 1230
||||| || |||||||| || ||||||||||||||| | || |||||||| ||||| ||
Sbjct 1186 TCCAGCTGAGAACAACGAACCTGTGAAGGTTGTTGTTGCCGAGAGCCTTGATGACATAGT 1245
Query 1231 CTTAAACTCTGGAAAGAACGTTTTGCTTGAATTCTATGCTCCATGGTGTGGACACTGCCA 1290
|| || ||||||||||| || ||| |||| |||||||| |||||||||||||| || ||
Sbjct 1246 TTTCAAGTCTGGAAAGAATGTCTTGATTGAGTTCTATGCACCATGGTGTGGACATTGTCA 1305
Query 1291 AAAGCTTGCTCCAATCTTGGACGAAGTTGCTGTGTCGTACCA-AAGCGACTCAAGTGT-A 1348
||| ||||||||||||||||||||||| ||| |||| | ||| || |||| ||||||| |
Sbjct 1306 AAAACTTGCTCCAATCTTGGACGAAGTGGCTTTGTCATTCCAGAA-CGACCCAAGTGTGA 1364
Query 1349 GTCATCGCTAAGCTAGATGCAACCGCAAACGACT-TCCCAAAAGATACCTTTGATGTGAA 1407
|||| || || | || ||||||||||| || | |||||| |||||||||||||||||
Sbjct 1365 -TCATTGCAAAATTGGACGCAACCGCAAATGA-TATCCCAAGTGATACCTTTGATGTGAA 1422
Query 1408 GGGATTCCCGACCATTTACTTCAAATCAGCGAGCGGAAACGTTGTGGTTTACGAAGGAGA 1467
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1423 AGGATTCCCGACCATTTACTTCAGGTCAGCGAGCGGAAACGTTGTAGTGTACGAAGGAGA 1482
Query 1468 CAGGACAAAGGAAGATTTCATAAGCTTCGTCGACAAGAACA 1508
||||||||||||||| ||||||| |||||| || |||||||
Sbjct 1483 CAGGACAAAGGAAGACTTCATAAACTTCGTTGAGAAGAACA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5