BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21760.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg921161 jgi|Araly1|921161|scaffold_102442.1 1786 0.0 > Ahg921161 jgi|Araly1|921161|scaffold_102442.1 Length=1076 Score = 1786 bits (967), Expect = 0.0 Identities = 1041/1077 (97%), Gaps = 3/1077 (0%) Strand=Plus/Plus Query 63 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGTATTTTCAAATCGTCTCT 122 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGGATTTTCAAATCGTCTAT 60 Query 123 CAGTTTCCATGACTTCAGATGCTCTCACTATACCATCTGAGCTTGAATCTGCCTTGCGGC 182 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 61 CAGTTTCCATGACTTCAGATGCTCTCACTATACCGTCTGAGCTTGAATCTGCATTGCGGC 120 Query 183 TCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 242 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGAACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 180 Query 243 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGA 302 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 181 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCCCATTATGATCCAGCTTTGA 240 Query 303 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 300 Query 363 ACTTAGGTAGAGCATCTTGTGTTTGTAGAAAGTGGAGGTACACAGTTCGAAACCCTATGT 422 |||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||| ||| Sbjct 301 ACTTAGGTAGAGCAGCTTGTGTATGCAGAAAGTGGAGGTACACGGTTCGGAACCCTGTGT 360 Query 423 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 420 Query 483 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 480 Query 543 GTACTGATGGTCTTTATGTGAGTAGGAATACTTACATTCGAGCTGGAATTGCTGAGTGGA 602 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 481 GTACTGATGGTCTATATGTGAGTAGGAATACTTACATTCGAGCTGGAATTACTGAGTGGA 540 Query 603 AGATTACAAATCCAGTTCACATTGTTTGTTACTACCGCTACATAAGGTTCTACCCTTCTG 662 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 AGATTACAAATCCAGTTCACATTGTTTGTTACTTCCGCTACATAAGGTTCTACCCTTCTG 600 Query 663 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 660 Query 723 TTAAGGCTTCTAAATCTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATG 782 ||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||| Sbjct 661 TTAAGGCTTCTAAATCTGACAGTCTTTACAGAGGCACTTATACATTGTCAATGTCGGATG 720 Query 783 ATAAGATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTT 842 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 721 ATAAGATTGAAGCAGCTGTTCTGTACCCAGGGACGCGCCCTACTGTCTTAAGGATCCGTT 780 Query 843 TAAGGTTAAGAGGAACAGCTATTGGAGCGAATAACAGGATGGATTTGCTGTCACTTGTGA 902 ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||| Sbjct 781 TAAGGTTAAGAGGAACAGCGGTTGGAGCGAATAACCGGATGGATTTGCTTTCACTAGTGA 840 Query 903 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGTTAGTTG 962 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGGTAGTTG 900 Query 963 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 960 Query 1023 GTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGGTTGA-CGAATCGGTTCTGAACTTG 1081 |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 961 GTATGACTCCATTCGTCTTCGTTCCTTTCGAAGAGGTTGAAC-AATCGGTTCTGAACTTG 1019 Query 1082 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAA-GAGACACATCGAAGTTTCT 1137 ||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||| Sbjct 1020 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAAAGAGACACAGCGACGTATCT 1076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5