BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21760.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921161 jgi|Araly1|921161|scaffold_102442.1 1786 0.0
> Ahg921161 jgi|Araly1|921161|scaffold_102442.1
Length=1076
Score = 1786 bits (967), Expect = 0.0
Identities = 1041/1077 (97%), Gaps = 3/1077 (0%)
Strand=Plus/Plus
Query 63 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGTATTTTCAAATCGTCTCT 122
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGGATTTTCAAATCGTCTAT 60
Query 123 CAGTTTCCATGACTTCAGATGCTCTCACTATACCATCTGAGCTTGAATCTGCCTTGCGGC 182
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 61 CAGTTTCCATGACTTCAGATGCTCTCACTATACCGTCTGAGCTTGAATCTGCATTGCGGC 120
Query 183 TCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGAACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 180
Query 243 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGA 302
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 181 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCCCATTATGATCCAGCTTTGA 240
Query 303 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 300
Query 363 ACTTAGGTAGAGCATCTTGTGTTTGTAGAAAGTGGAGGTACACAGTTCGAAACCCTATGT 422
|||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||| |||
Sbjct 301 ACTTAGGTAGAGCAGCTTGTGTATGCAGAAAGTGGAGGTACACGGTTCGGAACCCTGTGT 360
Query 423 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 420
Query 483 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 480
Query 543 GTACTGATGGTCTTTATGTGAGTAGGAATACTTACATTCGAGCTGGAATTGCTGAGTGGA 602
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GTACTGATGGTCTATATGTGAGTAGGAATACTTACATTCGAGCTGGAATTACTGAGTGGA 540
Query 603 AGATTACAAATCCAGTTCACATTGTTTGTTACTACCGCTACATAAGGTTCTACCCTTCTG 662
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AGATTACAAATCCAGTTCACATTGTTTGTTACTTCCGCTACATAAGGTTCTACCCTTCTG 600
Query 663 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 660
Query 723 TTAAGGCTTCTAAATCTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATG 782
||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 661 TTAAGGCTTCTAAATCTGACAGTCTTTACAGAGGCACTTATACATTGTCAATGTCGGATG 720
Query 783 ATAAGATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTT 842
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 721 ATAAGATTGAAGCAGCTGTTCTGTACCCAGGGACGCGCCCTACTGTCTTAAGGATCCGTT 780
Query 843 TAAGGTTAAGAGGAACAGCTATTGGAGCGAATAACAGGATGGATTTGCTGTCACTTGTGA 902
||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct 781 TAAGGTTAAGAGGAACAGCGGTTGGAGCGAATAACCGGATGGATTTGCTTTCACTAGTGA 840
Query 903 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGTTAGTTG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGGTAGTTG 900
Query 963 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 960
Query 1023 GTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGGTTGA-CGAATCGGTTCTGAACTTG 1081
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 961 GTATGACTCCATTCGTCTTCGTTCCTTTCGAAGAGGTTGAAC-AATCGGTTCTGAACTTG 1019
Query 1082 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAA-GAGACACATCGAAGTTTCT 1137
||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||
Sbjct 1020 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAAAGAGACACAGCGACGTATCT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5