BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21770.1

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912019 jgi|Araly1|912019|Al_scaffold_0001_2273                    532    8e-151


> Ahg912019 jgi|Araly1|912019|Al_scaffold_0001_2273
Length=336

 Score =  532 bits (288),  Expect = 8e-151
 Identities = 320/336 (95%), Gaps = 0/336 (0%)
 Strand=Plus/Plus

Query  40   ATGGCGACGGGGACGGCGACGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  99
            ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGACGAGGCCGGCGATGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  60

Query  100  TTCGAGACTGATGATCACGAAGCCTTCATAGAGTACAAGATGAAGAATGACGGTAAAGTC  159
            ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct  61   TTCGAGACTGAGGATCACGAAGCCTTCATAGAATACAAGATGACGAACGACGGTAAAGTC  120

Query  160  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  180

Query  220  CTATGCGTCGCCGCTTTCGAACACGCCTCTGAACACTCTTTCTCCATCATCCCCACTTGC  279
            || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  CTCTGCGTCGCCGCCTTCGAACACGCCTCCGAACACTCTTTCTCCATCATCCCCACTTGC  240

Query  280  TCCTACGTTTCCGAAACGTTTCTTCATCGAAACCCAACGTGGCAGCGTCTGGTTCACTCA  339
            ||||||||||||||||||||| ||| |||| ||||| ||||| ||| |||||||||||||
Sbjct  241  TCCTACGTTTCCGAAACGTTTATTCCTCGATACCCATCGTGGGAGCATCTGGTTCACTCA  300

Query  340  GAGGATGATTCCAAGAACCTCAAGTCTAGCATCTGA  375
            ||||||||||||||||||||||||||||||||||||
Sbjct  301  GAGGATGATTCCAAGAACCTCAAGTCTAGCATCTGA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20909262772


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5