BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21780.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921163 jgi|Araly1|921163|scaffold_102444.1 1596 0.0
Ahg912019 jgi|Araly1|912019|Al_scaffold_0001_2273 353 2e-96
> Ahg921163 jgi|Araly1|921163|scaffold_102444.1
Length=1023
Score = 1596 bits (864), Expect = 0.0
Identities = 961/1009 (95%), Gaps = 1/1009 (0%)
Strand=Plus/Plus
Query 339 AGAGAAAGTGGATGGGGGACACGAAGGTAGAGACAATCTCGAGGTTAGCTCAATGGAGAA 398
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 10 AGAGAGAGTGGATGGGGGACACGAAGGTGGAGACAATCTCGAGGTTAGCTCAATGGAGGA 69
Query 399 TTGAAAATTTTGGTCCTTGTTCTTTCAAAAAGTCCGATCCTTTCAAAGTCGGAATTTGGA 458
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 70 TTGAAAATTTTGGACCTTGTTCTTTCAAAAAGTCCGATCCTTTTAAAGTCGGAATTTGGA 129
Query 459 ATTGGCATCTGTCTATAGAGAGGAATCGCTATCTATCAGTGAGGCTATTCCCAGAACTTT 518
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 130 ATTGGCATCTGTCTATAGAGAGGAATCGTTATCTATCAGTGAGGCTTTTCCCAGAGCTTT 189
Query 519 CTCGAGTATCTAAAGAGCAACCTCCTGTTGCCAAATTTGTTCTTCGTGTCTCCAACGTTG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTCGAGTATCTAAAGAGCAACCTCCTGTTGCCAAATTTGTTCTTCGTGTCTCCAACGTTG 249
Query 579 GCCCCAATCGTAGATTCTACATCTCTCCTGTTTATGAGAAGCTGCTGCGTACAACTGATG 638
| || |||||||||||||||||||||||||| ||||| || ||| |||||||||||||||
Sbjct 250 GTCCTAATCGTAGATTCTACATCTCTCCTGTGTATGAAAAACTGTTGCGTACAACTGATG 309
Query 639 ATTGTGTGTGGCATGTTGACTCCAGTTTCCACGGTCGATTCACCATTGATGTTGAGTTTC 698
|||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 310 ATTGTGTGTGGCATGTGGACTCCAGCTTCCATGGTCGATTCACCATTGATGTCGAATTTC 369
Query 699 TTGATCTCAAAATCTGCCCTGTGAATGGTGGTGAAGCTTCTCCTGTTTGGCCAACCGATG 758
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 370 TGGATCTCAAAATCTGCCCTTTGAATGGTGGTGAAGCTTCTCCTGTTTGGCCAACCGATT 429
Query 759 CAACAATGCAATCAATCTCTACTCAAACCACTCTCAAATGCTTATCCCGGATGCTAGAGG 818
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CAACAATGCAATCAATCTCGACTCAAACCACTCTCAAATGCTTATCCCGGATGCTAGAGG 489
Query 819 AAAGCATACTAACCGATGTAATCATCCACACAGCCGATGGAACACTCTCTGCTCACAAAG 878
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAAGCATCCTAACCGATGTAATCATCCACACAGCCGATGGAACACTCTCTGCTCACAAAG 549
Query 879 CTATCCTCTCAGCTAGCTCAACTGTTTTCAAAAGCATGTTCCACCACGACCTCATGGAAA 938
|||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 550 CTATCCTCTCGGCTAGCTCTACCGTTTTCAAAAGCATGTTCCACCACGACCTCAAGGAAA 609
Query 939 AGGAATCATCCACAATCCACATAGACGACATGTCGAGAGAATCTTGCATGGCTCTACTAA 998
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 610 AAGAATCATCCACAATCCACATCGACGACATGTCAAGAGAATCTTGCATGGCTCTACTAA 669
Query 999 GTTACCTCTACGGAAACATAACCCAAGAAGAGTTCTGGAAACACAGGCTCGCCCTCCTCG 1058
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 670 GTTACCTATACGGAAACATAACCCAAGAAGAGTTCTGGAAACACAGGCTTGCCCTACTCG 729
Query 1059 GCGCTGCAAACAAGTACGACATAACGGATTTGAAAGCAGCCTGCGAGGAGAGCCTAATGG 1118
| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 730 GTGCTGCAAACAAATACGACATAACGGATTTGAAAGCAGCGTGCGAGGAAAGCCTAATGG 789
Query 1119 AAGATATAAACTCGAGTAATGTGCTCGAGAGGCTACAAGAAGCTTGGCTTTATCAGCTGG 1178
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 790 AAGACATAAACTCGAGTAATGTGCTCGAGAGACTACAAGAAGCTTGGCTGTATCAGCTGG 849
Query 1179 AGAAACTGAAGAAAGGGTGTTTGATGTATTTGTTTGATTTCGGAAAGATTTATGATGTCA 1238
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 850 AGAAACTGAAGAAAGGGTGTCTGATGTATTTGTTTGATTTCGGAAAGATATATGATGTCA 909
Query 1239 GAGAAGAAATCAGCAGTTTCTTCAGGCAAGCTGATCGAGAACTGATGCTGGAGATGTTTC 1298
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 910 GAGAAGAAATCAGCAATTTCTTCAGGCAAGCTGATCGAGAACTGATGTTGGAGATGTTTC 969
Query 1299 AAGAGGTTTTGTCTGTGTGGAAACCGGTCTAATATACACTTACACACAT 1347
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 970 AAGAGGTTTTGTCCGTGTGGAAACCGGTCTAATATACT-TTACACACAT 1017
> Ahg912019 jgi|Araly1|912019|Al_scaffold_0001_2273
Length=336
Score = 353 bits (191), Expect = 2e-96
Identities = 211/221 (95%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 1 AAAGAGTGTTCAGAGGCGTGTTCGAAAGCGGCGACGCATAGATGCGAAGCTAAACCAAGT 60
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 221 AAAGAGTGTTCGGAGGCGTGTTCGAAGGCGGCGACGCAGAGATGCGAAGCTAAACCAAGT 162
Query 61 CCTGCTTTTGACGGCGGTACGAAGGTTCGAACCAGATCCATGACTTTACCGTCATTCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 161 CCTGCTTTTGACGGCGGTACGAAGGTTCGAACCAGATCCATGACTTTACCGTCGTTCGTC 102
Query 121 ATCTTGTACTCTATGAAGGCTTCGTGATCATCAGTCTCGAATCTATGTCTTCCTTCGTTC 180
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 101 ATCTTGTATTCTATGAAGGCTTCGTGATCCTCAGTCTCGAATCTATGTCTTCCTTCGTTC 42
Query 181 CACACGATCTTCGGTTTCTCCGTCGCCGTCCCCGTCGCCAT 221
||||||||||||||||||||| |||||| || |||||||||
Sbjct 41 CACACGATCTTCGGTTTCTCCATCGCCGGCCTCGTCGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5