BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21810.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472419 jgi|Araly1|472419|fgenesh2_kg.1__2373__AT1G21810.1 2597 0.0
Ahg476922 jgi|Araly1|476922|fgenesh2_kg.2__2052__AT1G77580.2 193 5e-48
> Ahg472419 jgi|Araly1|472419|fgenesh2_kg.1__2373__AT1G21810.1
Length=2015
Score = 2597 bits (1406), Expect = 0.0
Identities = 1747/1911 (91%), Gaps = 25/1911 (1%)
Strand=Plus/Plus
Query 1 ATGACTGGTACTACTTTGATATTGGAACCAGTTATGGATTCCAAAGATGAGCTAGTGAAA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4 ATGACTGGTACTACTTTGATATTGGAACCAGCTATGGATTCCAAAGATGAGCTAGTGAAA 63
Query 61 CAACATGCCAAAGTTGCAGAAGATGCTGTTGCTGGGTGGGAGAAAGCTGAGAATGAAGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CAACATGCCAAAGTTGCAGAAGATGCTGTTGCTGGGTGGGAGAAAGCTGAGAATGAAGTG 123
Query 121 GTTGAGCTGAAGCAAAAGCTCGAGGATGCGGCTG-ATAAGAACATTGTCTTGGAAGATAG 179
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 124 GTTGAGCTGAAGCAAAAGCTCGAGGATGCGG-TGGATAAGAACATTGTCTTGGAAGATAG 182
Query 180 GGTAAGTCATCTTGATGGGGCGCTTAAGGAGTGTGTGAGACAACTAAGGCAGTTTAGAGA 239
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 183 GGTAAGTCATCTTGATGGGGCACTCAAGGAGTGTGTTAGACAACTAAGGCAGTTTAGAGA 242
Query 240 TGAACAAGAGAAGAATATTCAAGCAGCTGTGACTGAGAGCACCAAGGAGTTGCATTCTGC 299
||||||||||| ||| ||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct 243 TGAACAAGAGAGGAAAATTCAAGAAGCCGTGACTGAGAGTACCAAGGAGTTGCAATCTGC 302
Query 300 TAACACTGGTCTAGAGAAGCGAGTTCTTGAGCTCCAGAAAGAAGCAGAAGCTGCTAAATC 359
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 303 TAACACTGGTCTAGAGAGGCGAGTTCTTGAGCTCCAGAAGGAAGCAGAAGCTGATAAATC 362
Query 360 TGAAAACATGATGCTGAGACGCGAGTTTCTTACACAGCGTGAAGACCTTGAGATTGTGAT 419
|||| ||||||| |||||||||||||||||| |||||||| ||| ||||||||||| ||
Sbjct 363 CGAAATCATGATGATGAGACGCGAGTTTCTTAGACAGCGTGGAGAGCTTGAGATTGTTAT 422
Query 420 GATTGAGAGGGACTTGAGCACTCAAGCAGCAGAAACTGCTAGTAAGCAGCATTTAGACAT 479
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 423 GATTGAGAGGGATTTGAGCACTCAAGCAGCTGAAACTGCTAGTAAACAGCATTTAGATAG 482
Query 480 CATAAAGAAGTTGGCGAAACTCGAAGCTGAGTGCAGGAAGCTTAGGATTTTGGCTAAAAC 539
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 CATAAAGAAGGTGGCGAAACTCGAAGCTGAGTGCAGGAAGCTTAGGATTTTGGCTAAATC 542
Query 540 ATCATCATCGCTATCATCTAATCAATCTGTGGATAGTCATTCAGATGGAGGAAGGGAGAG 599
||||||||| || ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 543 ATCATCATC--TA--ATC-AATC---CT-TAGATAGTCATTCAGATGGAGGAAGGGAGAG 593
Query 600 AGTTGAGGGGAGTTGCTCTGATTCATGGGCATCATCAGCATTTATTTCTGAGTTAGATCA 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGTTGAGGGAAGTTGCTCTGATTCATGGGCATCATCAGCATTTATTTCTGAGTTAGATCA 653
Query 660 AATCAAGAATGAAAAAGGCGGCAATAGAAGTCTTCAGGGCACTACTTCATCAACTGAAAT 719
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 654 ATTCAAGAATGAAAAAGGCGGCGATAGAAGTCTTCAGGGAACTACTTCATCAACTGAAAT 713
Query 720 TGATCTCATGGATGATTTCCTTGAGATGGAACGTCTTGTGGCTCTTCCTACTGAGACACA 779
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 714 TGATCTCATGGATGATTTCCTTGAGATGGAACGTCTTGTGGCTCTGCCTGCTGAGACACA 773
Query 780 GGCTAAAAACTCCAAGGA-TGGATATGAATTGAGCTTAATGGAGAAGTTGGAGAAGATAC 838
||||||||||||||| | || ||||||| |||||||||||||||||||||||||| |||
Sbjct 774 AGCTAAAAACTCCAAG-ACTGAATATGAAATGAGCTTAATGGAGAAGTTGGAGAAGCTAC 832
Query 839 AAGCAGAAAAGGATGATCTTGAAAGA-GAAGTTAAATGTTGTAGAGAAGCGGAAAAGAGA 897
| |||||||||||||| ||||||| | ||||||||| | ||||||||||| || ||||||
Sbjct 833 AGGCAGAAAAGGATGAGCTTGAAA-ATGAAGTTAAAAGATGTAGAGAAGCAGAGAAGAGA 891
Query 898 TTGAGCTTAGAGATTGAAGCAGTTGTTGGTGACAAAATGGAGTTGGAAGATATGTTAAAG 957
|||||||||||| | ||||| | | || |||| ||||||||||| |||| ||| ||||||
Sbjct 892 TTGAGCTTAGAGCTCGAAGCTGCTATTTGTGATAAAATGGAGTTTGAAGTTATATTAAAG 951
Query 958 AGGGTGGAAGCTGAGAAAGCTGAGCTAAAGACATCTTTTGACGTGCTCAAAGATAAATAT 1017
| | ||||||||||||||||||| ||| ||| ||| |||||||| ||||| ||| ||||
Sbjct 952 AAGATGGAAGCTGAGAAAGCTGAACTACAGATATCGTTTGACGTAATCAAACATAGATAT 1011
Query 1018 CAAGAGTCAAGAGTTTGTTTTCAAGAAGTTGACACAAAGTTGGAGAAGCTACAAGCAGAA 1077
||||| || |||| ||||||||||||| |||| | ||| || | |||||||||||||||
Sbjct 1012 CAAGAATCTAGAGATTGTTTTCAAGAAATTGAGATGAAGATGAAAAAGCTACAAGCAGAA 1071
Query 1078 AAGGATGAGCTT-GACAGTGAAGTT-ATTTGTTGTAAAGAAGCAGAGAAGAGATTCAGCT 1135
|| ||||| ||| || | ||||||| | | |||||| |||| | || |||||||| | ||
Sbjct 1072 AAAGATGA-CTTTGAAACTGAAGTTGAAT-GTTGTAGAGAATCGGAAAAGAGATTGAACT 1129
Query 1136 TAGAACTCGAAGCTGTAGTTGGTGACAAAATTGAGATGGAAGATGA-GTTGGAGAAGATG 1194
|||| || |||||| | || |||||||||| ||| ||||||| || |||||||||||||
Sbjct 1130 TAGAGCTTGAAGCTATTGTCGGTGACAAAACAGAGTTGGAAGA-GAAGTTGGAGAAGATG 1188
Query 1195 GAAGCTGAGAAAGCTGAGCTAAAGATATCTTTTGACGTAATTAAAGATCAATATCAAGAA 1254
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1189 GAAGCTGAGAAAGCTGAGCTAAAGATATCTTTTGACTTAATTAAAGATCAATATCAAGAA 1248
Query 1255 TCTAGAGTTTGTTTTCAAGAAGTTGAGATGAAGTTGGAAGCGATGAAAAGGGAGCTTAAA 1314
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1249 TCTAGAGTTTGTTTTCAAGAAGTTGAGATGAAGTTGGAAGAGATCAAAAGGGAGCTGAAA 1308
Query 1315 CTAGCTAATGAATCGAAAACACAAGCCGAATCTCGGGTGACCAGAATGGAAGCAGAGGTG 1374
|||||||||||||| ||||||||||| ||||||| | | | |||||||||||||||||||
Sbjct 1309 CTAGCTAATGAATCAAAAACACAAGCTGAATCTCAGTTCATCAGAATGGAAGCAGAGGTG 1368
Query 1375 AGAAAGGAGAGGAT-TGTCTCTGATGGGCTAAAGGAAAAGTGTGAGACATTTgaagaaga 1433
|||||||||||| | ||| ||||||| ||| | ||||||||||||| | |||||||||||
Sbjct 1369 AGAAAGGAGAGG-TGTGTTTCTGATGAGCTGAGGGAAAAGTGTGAGGCTTTTGAAGAAGA 1427
Query 1434 gcttagaagagagatagaagagaagacaatgatcaagagagaaAAAGTGGAACCAAAGAT 1493
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1428 GCTTAGAAGAGAGATAGAAGAGAAGACAATGATAAAGAGAGAAAAAATAGAACCAAAGAT 1487
Query 1494 CAAACAGGAAGACATAGCAACAGCTGCAGGAAAATTTGCAGATTGTCAGAAAACAATAGC 1553
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1488 CAAACAGGGAGACATAGCAACAGCTGAAGGAAAATTTGCAGATTGTCAGAAAACAATAGC 1547
Query 1554 ATCACTTGGGAAACAGCT-ACAATCTCTTGCAACACTAGAAGAATTCTTGATCGATACAG 1612
|||||| ||||||||||| | |||| ||||||| ||| ||||| |||||||||||| |||
Sbjct 1548 ATCACTAGGGAAACAGCTGA-AATCCCTTGCAAAACTTGAAGATTTCTTGATCGATTCAG 1606
Query 1613 CTAGCATTCCAGGTTCTGCAAGGTCAGTTCACAACAAGGAAGCTTTGTTAGGAAAAGATC 1672
||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||| |
Sbjct 1607 CTAGCATTCCAGGTTCTGCAAGGTCAGTTAACAAGAAGGAAGTTTTTTTAGGAAAAGAAC 1666
Query 1673 CTCATGAGTGCATCAAAACAATCAATGGAAGATCACTTGAGTTTCTTGCAATCCAGAACA 1732
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1667 CTCATGAGTGCAACAAAACAACCAATGGAAGATCACTTGAGTTTCTTGCAATCAAGAACA 1726
Query 1733 GCAATAACAAGACCTCACCTCCTTGTTCATCTTCTTCGGACTCAACAACAGTGTCATTAA 1792
|||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1727 GCAACAACAATACCTCACCTCCTTGTTCATCTTCTTCTGATTCAACAACAGTGTCATTAA 1786
Query 1793 TTATGTCATCAAACCGAGGGAGTTCTGAGAAGAATCGCAACGGATTTGCCACGGTTTTCA 1852
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1787 TTATGACATCAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCCACGGTTTTCA 1846
Query 1853 CTCGAAGTAGAAACTCAGTAAATTTGGGGATTTAGGAGAAGCAATAGGTTC 1903
|||||||||| ||| || || ||||||||||||||||||||| ||| ||||
Sbjct 1847 CTCGAAGTAGGAACGCAATACATTTGGGGATTTAGGAGAAGCTATACGTTC 1897
Score = 178 bits (96), Expect = 2e-43
Identities = 113/121 (93%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 1947 TTCTTACCATAATTTTCAGATTCTGACTTGTTAGTAGCAAAAAGATCACCCTTGTTTCTT 2006
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1895 TTCTTACCATAAATTTCAGATTCTCACTTGTTAGTAGCAGAAAGATCACCCTTGTCTCTT 1954
Query 2007 TTGCTACATAGTGTAATCTTCTTAACGTT-TATGTCTTGTGAGATTCATCTTTGTTATTT 2065
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1955 CTGCTACTTAATGTAATCTTCTTAACGTTATATGTCTTGTGAGATTCATCTTTGTTATTT 2014
Query 2066 C 2066
|
Sbjct 2015 C 2015
> Ahg476922 jgi|Araly1|476922|fgenesh2_kg.2__2052__AT1G77580.2
Length=2717
Score = 193 bits (104), Expect = 5e-48
Identities = 217/269 (81%), Gaps = 18/269 (7%)
Strand=Plus/Plus
Query 1361 TGGAAGCAGAGGTGAGAAAGGAGAGGATTGTC-TCTGATGGGCTAAAGGA-AAAGTGTGA 1418
|||||| ||| |||||||||||||||||| | | ||||| ||| |||| ||| |||||
Sbjct 2075 TGGAAGAAGAAATGAGAAAGGAGAGGATTG-CTTTTGATGAGCT-TAGGAGAAAATGTGA 2132
Query 1419 GACAT-TTgaagaagagcttagaagagagatagaagagaagacaatgatcaagagagaaA 1477
| | | ||||| ||||| || | ||| ||||||| | | |||||||| ||||
Sbjct 2133 GGC-TCTTGAACAAGAG-ATATCTCTG-CATA-AAGAGAACTC-A--ATCAAGAGTGAAA 2185
Query 1478 A-AGTGGAACCAAAGATCAAACAGGAAGACATAGCAACAGCTGCAGGAAAATTTGCAGA- 1535
| | |||||||||||||||||||||||||||| |||||||||||| ||| |||| ||
Sbjct 2186 ATA-AAGAACCAAAGATCAAACAGGAAGACATAGAAACAGCTGCAGGGAAACTTGC-GAA 2243
Query 1536 TTGTCAGAAAACAATAGCATCACTTGGGAAA-CAGCTACAATCTCTTGCAACACTAGAAG 1594
|||||||||||||||||| || |||||||| ||||| ||||||||||||||||| ||||
Sbjct 2244 TTGTCAGAAAACAATAGCTTCG-TTGGGAAAACAGCTTCAATCTCTTGCAACACTTGAAG 2302
Query 1595 AATTCTTGATCGATACAGCTAGCATTCCA 1623
| ||||| | ||||||| | || ||||||
Sbjct 2303 ATTTCTTAACCGATACACCGAGTATTCCA 2331
Score = 75.0 bits (40), Expect = 2e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1804 AACCGAGGGAGTTCTGAGAAGAATCGCAACGGATTTGCCACGGTTTTCACTCGAAGTA 1861
||||||||||||||||||||||||||||| |||||||| || || ||||| ||||||
Sbjct 2494 AACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCAACAGTATTCACAAGAAGTA 2551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5