BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21830.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313074 jgi|Araly1|313074|fgenesh1_pm.C_scaffold_1001854 1027 0.0
> Ahg313074 jgi|Araly1|313074|fgenesh1_pm.C_scaffold_1001854
Length=618
Score = 1027 bits (556), Expect = 0.0
Identities = 600/621 (97%), Gaps = 3/621 (0%)
Strand=Plus/Plus
Query 88 ATGGATATGTACAAAGATGATAGCTCACCATACTGTTATTTCCATCCAAAAGAAGAGTAT 147
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGATATGTACAAAGATGATAGCTCACCATACTGTTATTTCCATCCAAAGGAAGAGTAT 60
Query 148 GTTGGAGTTTGTCCTCTCTGTTTGAACGAGAGGCTTCTTGTTTTAGCTTCAAAACAGAGA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGGAGTTTGTCCTCTCTGTTTGAACGAGAGGCTTCTTGTTTTAGCTTCAAAACAGAGA 120
Query 208 TCATCAAGAACCAAACACTCTTCCTCTTCACCAATCATCAGCCTCCCTAAGATATTCGCC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCATCAAGAACCAAACACTCTTCCTCTTCACCAATCATCAGCCTCCCTAAGATCTTCGCC 180
Query 268 TTGAGCTCTCTCCTCAGTCGCCTCGATCTCCGTCACCGGAAATTCCATCCCTCCTCCGAT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGAGCTCTCTCCTCAGTCGCCTCGATCTCCGTCACCGGAAATTCCATCCCTCCTCCGAT 240
Query 328 CTTGACGTCTCCACAAGCCAAGAAGATTCCTTTATATCGATAAAATTCGAAAACGACGGA 387
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 241 CTTGACGTCTCCACAAGCCAAGAAGATTCTTTTATATCGATAAAATTCGAAAACGATGGA 300
Query 388 AACGCGTCGTGGGAAAAGAAAGCAGTAGTGACAAAGGTTTGTGTAGacaacaacaacaac 447
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 301 AACGCGTCGTGGGAGAAGAAAGCAGTAGTGACGAAGGTTTGTGTAGACAACAAGAACAAC 360
Query 448 aacacaacaaactcaacaTGCAAGAAGCAGCAATCTCCTATAACGAGCAATACCAGTATC 507
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 A-CA-A-CAAACTCAACATGCAAGAAGCAGCAATCTCCTATAACGAGCAATACCAGTATC 417
Query 508 GTAGAGCACAATAGTGCCAAGTCATCGCTTAGATGGCGCAAGCGTATTGGTCATCTATTC 567
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 418 GTAGAGCACAATAGTGCCAAGTCATCGCTTAGGTGGCGCAAACGTATTGGGCATCTCTTC 477
Query 568 CACGTCATCAAACTCAAATCAGGATCGTCCACGTCTTCTTGCCATGTGGCACCATCTAAG 627
|||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 478 CACGTCATCAAACTCAGATCAGGATCATCCACGTCGTCTTGCCACGTGGCACCATCCAAG 537
Query 628 GTCGAAGGAACCAAAGTGAGGAAACAGGGTTGGATGGTGAGGACCTTAACCAGaaaaaaa 687
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 GTCGAAGGAGCCAAAGTGAGGAAACAGGGTTGGATGGTGAGGACCTTAACCAGAAGAAAA 597
Query 688 TCCAGGAAAAGTAAAAGTTGA 708
|||||||||||||||||||||
Sbjct 598 TCCAGGAAAAGTAAAAGTTGA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5