BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21840.1 Length=1299 Score E Sequences producing significant alignments: (Bits) Value Ahg472420 jgi|Araly1|472420|fgenesh2_kg.1__2374__AT1G21840.1 1203 0.0 > Ahg472420 jgi|Araly1|472420|fgenesh2_kg.1__2374__AT1G21840.1 Length=1080 Score = 1203 bits (651), Expect = 0.0 Identities = 773/832 (93%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 297 TTTCAAAAATCGCTTTTTTAGATCGAAACATTGCTCTGATTGTTTCTCTATATTAATGCA 356 ||| ||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||| Sbjct 253 TTT-AAAAATCGCTTTTTTAGGTTGAAACATTGCTCTGATGGTTTCTCTATAGTAATGCA 311 Query 357 TCATTGTGTGTGTTTAACTTCTCTT-TAGAAAGAGGTCTCATTGATGGAAGAAGACGAAA 415 ||| | ||||||||| |||||| || ||||||||||||| ||||||||||| |||||||| Sbjct 312 TCA-T-TGTGTGTTT-ACTTCT-TTATAGAAAGAGGTCTAATTGATGGAAGTAGACGAAA 367 Query 416 GACGCGACATTGTTATGTCAAGAGCTTCTTCTTGTATGCAGTGGAGTCAGTGGCAATTAC 475 || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 368 GATGCGACATTGTTATGTCAAGAGCAGCTTCTTGTATGCAGTGGAGTCAATGGCAATTAC 427 Query 476 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGTTTGGTCTCGAAGCAGCTATTC 535 |||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 428 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGCTCGGTCTCGAAGCAGCGGTTC 487 Query 536 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCACATCATTCATGTGTTGGATA 595 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 488 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCATATCATTCATCTGTTGGATA 547 Query 596 ACACAGCTAGCTTATTGCTTCCTTTTGTCTACTCTGCTCTCAAATCTCCTGATATAGAGA 655 ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 548 ACACAGCCAGCTTATTGCTTCCTTTTGTTTACTCTGCTCTCAAATCTCCTGATATTGAGA 607 Query 656 CATGGCATAAACTTGATGGAATACTTAACGCTACTTTAACTAACCAAGTTTCTTCAAAGG 715 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 608 CATGGCACAAACTTGATGGAATTCTTAACGCTACTTTAACTAACCAAGTTTCTTCCAAGG 667 Query 716 CGTCAATGTCACAAGGATCAGCTTTGTTTCGTATAGCTGCTTCGGTTTTTACTGAGGTAC 775 | || | |||||||||||||| |||||||||||||||||||| ||||| |||||| ||| Sbjct 668 CATCGGTTTCACAAGGATCAGCGTTGTTTCGTATAGCTGCTTCAGTTTTCACTGAGATAC 727 Query 776 CAAATCTTAAGATGATTCGTGATGCTTCTTTGGGGTCAAAAAATGTATGTTTCCACCATG 835 | |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||| Sbjct 728 CGAATCTTAAGATGATTCGTGACGCTTCTTTGGGCTCCAAAAATGTATATTTCCACCATG 787 Query 836 CACCGATATTCGGGCTTGTATGTGGTTTACTCGGCATGGATTCCGAGACTTCTCAGAGAG 895 |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| Sbjct 788 CACCGATATTCGGGCTTGTATGTGGTCTACTCGGTATGGATCCCGAGACTTCTCAGAGAG 847 Query 896 CGTATCTGTTTGTAACGCTCAGAGATGTTCTTTCTGCTGCAACGAGATTGAACATAGTTG 955 ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | Sbjct 848 CGTATCTGTTTGTAACGCTTAGAGATGTTCTCTCGGCTGCAACGAGATTGAACATAGTGG 907 Query 956 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCCATTGTTA-CTGAAACCGTTTTA 1014 ||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| Sbjct 908 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCTATTGT-AGCTGAAACAGTTTTA 966 Query 1015 GAGAAGTGGATGAATCGTGAAGCTGGTGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1074 ||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 967 GAGAAATGGATGGATCGTGAAGCTAGCGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1026 Query 1075 GTGCAAGGTTGTCACGGTTACTTGTTTTCTAGACTGTTTTGCTCTTGATGAA 1126 ||||||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 1027 GTGCAAGGTTGCCACGGTTACTTGTTTTCCAGACTGTTTTGTTCTTGATGAA 1078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48568596258 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5