BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21840.1
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472420 jgi|Araly1|472420|fgenesh2_kg.1__2374__AT1G21840.1 1203 0.0
> Ahg472420 jgi|Araly1|472420|fgenesh2_kg.1__2374__AT1G21840.1
Length=1080
Score = 1203 bits (651), Expect = 0.0
Identities = 773/832 (93%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 297 TTTCAAAAATCGCTTTTTTAGATCGAAACATTGCTCTGATTGTTTCTCTATATTAATGCA 356
||| ||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||
Sbjct 253 TTT-AAAAATCGCTTTTTTAGGTTGAAACATTGCTCTGATGGTTTCTCTATAGTAATGCA 311
Query 357 TCATTGTGTGTGTTTAACTTCTCTT-TAGAAAGAGGTCTCATTGATGGAAGAAGACGAAA 415
||| | ||||||||| |||||| || ||||||||||||| ||||||||||| ||||||||
Sbjct 312 TCA-T-TGTGTGTTT-ACTTCT-TTATAGAAAGAGGTCTAATTGATGGAAGTAGACGAAA 367
Query 416 GACGCGACATTGTTATGTCAAGAGCTTCTTCTTGTATGCAGTGGAGTCAGTGGCAATTAC 475
|| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 368 GATGCGACATTGTTATGTCAAGAGCAGCTTCTTGTATGCAGTGGAGTCAATGGCAATTAC 427
Query 476 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGTTTGGTCTCGAAGCAGCTATTC 535
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 428 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGCTCGGTCTCGAAGCAGCGGTTC 487
Query 536 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCACATCATTCATGTGTTGGATA 595
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 488 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCATATCATTCATCTGTTGGATA 547
Query 596 ACACAGCTAGCTTATTGCTTCCTTTTGTCTACTCTGCTCTCAAATCTCCTGATATAGAGA 655
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 548 ACACAGCCAGCTTATTGCTTCCTTTTGTTTACTCTGCTCTCAAATCTCCTGATATTGAGA 607
Query 656 CATGGCATAAACTTGATGGAATACTTAACGCTACTTTAACTAACCAAGTTTCTTCAAAGG 715
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 608 CATGGCACAAACTTGATGGAATTCTTAACGCTACTTTAACTAACCAAGTTTCTTCCAAGG 667
Query 716 CGTCAATGTCACAAGGATCAGCTTTGTTTCGTATAGCTGCTTCGGTTTTTACTGAGGTAC 775
| || | |||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 668 CATCGGTTTCACAAGGATCAGCGTTGTTTCGTATAGCTGCTTCAGTTTTCACTGAGATAC 727
Query 776 CAAATCTTAAGATGATTCGTGATGCTTCTTTGGGGTCAAAAAATGTATGTTTCCACCATG 835
| |||||||||||||||||||| ||||||||||| || |||||||||| |||||||||||
Sbjct 728 CGAATCTTAAGATGATTCGTGACGCTTCTTTGGGCTCCAAAAATGTATATTTCCACCATG 787
Query 836 CACCGATATTCGGGCTTGTATGTGGTTTACTCGGCATGGATTCCGAGACTTCTCAGAGAG 895
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 788 CACCGATATTCGGGCTTGTATGTGGTCTACTCGGTATGGATCCCGAGACTTCTCAGAGAG 847
Query 896 CGTATCTGTTTGTAACGCTCAGAGATGTTCTTTCTGCTGCAACGAGATTGAACATAGTTG 955
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 848 CGTATCTGTTTGTAACGCTTAGAGATGTTCTCTCGGCTGCAACGAGATTGAACATAGTGG 907
Query 956 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCCATTGTTA-CTGAAACCGTTTTA 1014
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 908 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCTATTGT-AGCTGAAACAGTTTTA 966
Query 1015 GAGAAGTGGATGAATCGTGAAGCTGGTGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1074
||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 967 GAGAAATGGATGGATCGTGAAGCTAGCGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1026
Query 1075 GTGCAAGGTTGTCACGGTTACTTGTTTTCTAGACTGTTTTGCTCTTGATGAA 1126
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1027 GTGCAAGGTTGCCACGGTTACTTGTTTTCCAGACTGTTTTGTTCTTGATGAA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48568596258
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5