BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21850.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313077 jgi|Araly1|313077|fgenesh1_pm.C_scaffold_1001857 2604 0.0
> Ahg313077 jgi|Araly1|313077|fgenesh1_pm.C_scaffold_1001857
Length=1632
Score = 2604 bits (1410), Expect = 0.0
Identities = 1551/1620 (96%), Gaps = 6/1620 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAAAGCGTGAACACCACGGCGATGATACTTGGTCTATTTTTTCTAATCAGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGGTCAAAAGCGTGAACACCACGGCGATGATACTTGGTCTATTGTTTCTAATCAGC 60
Query 61 TTCGTCGCTGCGGAAGATCCGTATAAATTCTTCGAATGGCACGTAACTTATGGTAACATA 120
||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||
Sbjct 61 TTCGTCGCTGCGGAAGATCCGTATAGATTCTTCGAATGGCACGTAACATACGGCAACATA 120
Query 121 TCTCCGCTCAAGGTTGCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAC 180
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCTCTCAACGTTGCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAT 180
Query 181 ATCGCCGCTGTTACCAATGATAATCTCATCATTAACGTATTCAACCATCTCGACGAACCT 240
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 181 ATCGTCTCTGTTACCAATGATAATCTCATCATTAACGTATTTAACCATCTCGACGAATCT 240
Query 241 TTCCTTATATCATGGAGCGGGATTCGAAACTGGAGGAATTCATACCAGGACGGAGTGTAC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTCCTTATATCATGGAGCGGGATTCGAAATTGGAGGAATTCATACCAGGACGGAGTGTAC 300
Query 301 GGGACGACGTGTCCAATCCCGCCGGGGAAAAACTACACCTACGCTCTTCAGGTTAAAGAT 360
|| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 GGAACGACGTGCCCAATCCCGCCGGGAAAAAACTACACCTACGTTCTTCAGGTTAAAGAT 360
Query 361 CAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGATTT 420
Query 421 GGAGCTATTCGTATCTCCAGCCGCCCCAGAATCCCCGTTCCATTCCCAGCCCCCGCTGGT 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 421 GGAGCTATTCGTATCTCCAGCCGCCCCAAAATCCCCGTTCCATTCCCAGCTCCCGCTGAT 480
Query 481 GATTACACCGTTCTCATCGGTGACTGGTACAAAACCAACCATAAGGACTTGAGAGCACAA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GATTACACCGTTCTCATCGGTGACTGGTACAAAACCAACCACAAGGACTTGAGAGCACAA 540
Query 541 CTCGATAATGGTGGAAAGCTTCCATTCCCGGATGGAATTCTCATCAATGGGCGCGGTAGT 600
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 541 CTCGATAATGGTGGAAAGCTTCCTTTACCAGATGGAATTCTCATCAATGGTCGCGGTAGT 600
Query 601 GGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAAATGTTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAAATGTTGGA 660
Query 661 TTGCAAAACTCTCTCAACTTCCGAATCCAAAACCACAAGATGAAGTTAGTTGAGGTCGAA 720
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 661 TTGCAAAACTCTCTCAACTTCCAAATCCAAAACCACATGATGAAGTTAGTTGAGGTCGAA 720
Query 721 GGGACACACACTATTCAGACTCCATTCTCTTCGCTTGATGTTCACGTCGGTCAATCTTAC 780
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 721 GGGACACACACTATTCAGACTCCATTCTCTACGCTTGATGTCCACGTCGGTCAATCTTAC 780
Query 781 TCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTACATTGTGGTCTCTAGTAGG 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTATATTGTGGTCTCTAGTAGG 840
Query 841 TTTACCTCGAAGATCCTTATTACCGCTGGTGTTCTTCATTACAGTAATTCTGCTGGACCT 900
|||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 841 TTTACCTCCAAGATCCTTATCACCACCGGTGTTCTTCATTACAGTAATTCTGCTGGACCT 900
Query 901 GTTTCTGGACCTATTCCAGAAGCACCAATTCAGTTGCGC-TGGTCTTTTGACCAAGCACG 959
|||||||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||
Sbjct 901 GTTTCTGGACCTATTCCAGATGGACCAACTCAGTTGC-CATGGTCTTTTGACCAAGCACG 959
Query 960 AGCCATCAAGACCAACCTTGCAGCGAGTGGACCTAGGCCAAACCCACAAGGTACATACCA 1019
||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||
Sbjct 960 AGCCATCAAGACCAACCTTACAGCGAGTGGACCAAGGCCAAACCCTCAAGGTTCATACCA 1019
Query 1020 CTATGGCAAGATAAA-AGTCACTCGAACAATCAAACTTGCTAGCTCTGCTGGAAATATCA 1078
||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1020 CTATGGCAAGATAAATA-TCACTCGAACAATCAGACTTGCTAACTCTGCTGGAAATATCA 1078
Query 1079 ATGGCAAGCAACGATACGCGGTGAATAGTGCATCATTCTACCCAACAGACACACCTTTGA 1138
| ||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||
Sbjct 1079 AAGGCAAGCAACGATACGCAGTGAATAGTGCATCATTTTACCCAGCAGACACCCCTTTGA 1138
Query 1139 AACTAGCGGACTACTTCAAAATTGCCGGTGTATACAACCCTGGAAGCATACCTGATCAGC 1198
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 AACTAGCGGACTACTTCAAAATTGCCGGTGTATACAATCCTGGAAGCATACCTGATCAGT 1198
Query 1199 CCACACATGGAGCAATATACCCTGTCACATCTGTTATGCAAACTGATTACAAAGCTTTTG 1258
||||| |||||||||||| |||||| ||||| || |||||||||||||||||| ||||||
Sbjct 1199 CCACATATGGAGCAATATTCCCTGTTACATCAGTAATGCAAACTGATTACAAAACTTTTG 1258
Query 1259 TGGAGATTGTTTTCGAGAATTGGGAAGATATTGTCCAGACCTGGCACCTCGACGGTTACT 1318
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 TGGAGATTGTTTTCGAGAACTGGGAAGATATTGTCCAGACCTGGCACCTTGACGGTTACT 1318
Query 1319 CTTTCTTCGTGGTTGGGATGGAACTTGGGAAGTGGAGTGCTGCCAGTAGAAAAGTCTACA 1378
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTTTCTACGTGGTTGGAATGGAACTTGGGAAGTGGAGTGCTGCCAGTAGAAAAGTCTACA 1378
Query 1379 ATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGGTGTATCC-AAGATCATGGACTGCC 1437
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1379 ATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGGTGTATCCCAA-ATCATGGACTGCC 1437
Query 1438 ATATACGTATCACTGGACAATGTAGGAATGTGGAACCTAAGATCAGAGTTATGGGAAAGA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATATACGTATCACTGGACAATGTAGGAATGTGGAACCTAAGATCAGAGTTATGGGAAAGA 1497
Query 1498 CAATACCTGGGACAACAGTTTTACATGCGTGTTTACACACCCTCCACTTCCCTCAGAGAT 1557
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1498 CAATACCTGGGACAACAGTTCTACATGCGTGTTTACACAACCTCCACTTCCCTCAGAGAT 1557
Query 1558 GAGTACTTGATCCCGAAGAACGCTCTTCTCTGCGGCAGGGCCACTGGCCACCACACCACG 1617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GAATACTTGATCCCGAAGAACGCTCTTCTCTGCGGCAGGGCCACTGGCCACCACACCACG 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5