BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21864.1

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921171 jgi|Araly1|921171|scaffold_102452.1                        405    1e-112


> Ahg921171 jgi|Araly1|921171|scaffold_102452.1
Length=327

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 294/330 (89%), Gaps = 6/330 (2%)
 Strand=Plus/Plus

Query  39   TTTGCAGACTCACAATACTTACGACATGGCAG-TTCAAGTGTCAAAGAAAATTTGTC-GT  96
            ||||||||||||| |||||||||||||||||| | ||| ||||||||||||| || | ||
Sbjct  1    TTTGCAGACTCACGATACTTACGACATGGCAGCTCCAA-TGTCAAAGAAAATCTG-CAGT  58

Query  97   GTATTGATGATTGTAATTTTATTTGCAATGATGTTTTCAGCTCATTCCAACTCGATAGAT  156
            |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  59   GTATTGATAATTGCAATTTTATTTGCAACGATGTTTTCAGCTCATTCCAACTCGATAGAT  118

Query  157  GTGTGTGTCAAAAATTGTGGCGTGAACCAGTGCATGAAAGCATCAAAGAAAGCGACTCCA  216
            |||||||||||| |||||| ||||||   |||||||||||||||||| ||||||||||||
Sbjct  119  GTGTGTGTCAAAGATTGTGTCGTGAATGTGTGCATGAAAGCATCAAAAAAAGCGACTCCA  178

Query  217  GCTATATGTGACAACCCTTGCAAGATTATATGTGATCCTCTCAACAACGAGCGATACATC  276
            || || |||||||| ||||||||||| || ||||||||  | |||   |||| |||||||
Sbjct  179  GCCATTTGTGACAATCCTTGCAAGATAATGTGTGATCCAATGAACGGTGAGCAATACATC  238

Query  277  GTCCCTCGAGGTAATGGTGGTCCTATAAAAAGGTTCTGCAGA-GCATTTAGCTGGATTTG  335
            |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||
Sbjct  239  GTCCCTCGAGGTAATGGTGGTCCTATCAAAAGGTTCTGCAGACG-ATTTAGCTGGATCTG  297

Query  336  TAGCGCGTAATTGATCGACATTACAAAAAT  365
            || | ||||| ||||||| |||||||||||
Sbjct  298  TAACCCGTAAATGATCGAAATTACAAAAAT  327



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17017392694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5