BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21870.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313079 jgi|Araly1|313079|fgenesh1_pm.C_scaffold_1001859 1591 0.0
Ahg476925 jgi|Araly1|476925|fgenesh2_kg.2__2055__AT1G77610.1 1050 0.0
> Ahg313079 jgi|Araly1|313079|fgenesh1_pm.C_scaffold_1001859
Length=1026
Score = 1591 bits (861), Expect = 0.0
Identities = 973/1028 (95%), Gaps = 4/1028 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGGAAGTCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTT 60
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAAGGAAGTCTGTGGCATCAATGGAGTATGTTCAGATCTCTGTTATCGATTCTT 60
Query 61 CAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGAAACTG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATGGTGGGGTTTTAATGTTACTGTTATCATCATGAACAAATGGATCTTTCAGAAACTG 120
Query 121 GATTTCAAGTTTCCATTATCAGTTTCATGTGTTCATTTCATATGTTCGTCGATTGGAGCA 180
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GATTTCAAATTTCCATTGTCAGTTTCATGTGTTCATTTCATATGTTCATCGATTGGAGCT 180
Query 181 TACATTGTGATTAAAGTCTTAAAGCTTAAACCTTTGATTGTGGTTGATCCAGAAGATAGG 240
||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||| |
Sbjct 181 TACATTGTGATCAAAGTCTTGAAGATTAAACCTTTGATTGTGGTTGATCCTGAAGATCGT 240
Query 241 TGGAGGAGGATTTTTCCAATGTCATTTGTGTTCTGTATCAACATTGTGTTGGGGAATATT 300
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 241 TGGAGGAGGATTTTTCCAATGTCATTTGTCTTTTGTATCAACATTGTGTTGGGGAACATC 300
Query 301 AGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 AGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTTACTCCGGCAACA 360
Query 361 ACAGTTGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGATTGGCGTATTTGGGCGTCA 420
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 ACAGTGGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGAATGGCGTATTTGGGCGTCG 420
Query 421 TTGGTGCCTATTGTTGGAGGGATTCTTCTTACTTCTATTACAGAACTTAGCTTTAATGTG 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TTGGTGCCTATTGTTGGAGGGATTCTTCTGACTTCTATTACAGAACTTAGCTTTAATGTG 480
Query 481 TTTGGATTCTGTGCTGCTTTGTTTGGATGTTTAGCTACCTCTACAAAGACCATTCTTGCA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGGATTCTGTGCTGCTTTGTTTGGATGTTTAGCTACCTCTACAAAGACCATTCTTGCG 540
Query 541 GAATCTCTTCTTCATGGATACAAATTTGACAGCATAAACACGGTATACTATATGGCGCCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAATCTCTTCTTCATGGATACAAATTTGACAGCATAAACACGGTATACTATATGGCGCCT 600
Query 601 TTCGCGACCATGATTCTCGGGTTACCTGCATTTTTACTAGAAAGG-AATGGAATTTTGGA 659
|| ||||||||||||||||| ||||| |||||| |||| ||| || |||||||||||| |
Sbjct 601 TTTGCGACCATGATTCTCGGATTACCAGCATTTCTACTTGAA-GGCAATGGAATTTTGAA 659
Query 660 TTGGTTTGAAGCACATCCATCTCCATGGTCGGCTCTCATAATTCTTTTCAACTCAGGTGT 719
||||||||||||||| || |||||||||||||||||||| ||| |||||| ||| |||||
Sbjct 660 TTGGTTTGAAGCACACCCGTCTCCATGGTCGGCTCTCATCATTATTTTCAGCTCGGGTGT 719
Query 720 TCTAGCTTTCTGTCTTAACTTCTCCATCTTCTATGTCATTCAATCCACAACAGCAGTCAC 779
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 720 TCTAGCTTTCTGTCTTAACTTCTCCATCTTCTATGTCATTCACTCCACAACGGCAGTCAC 779
Query 780 ATTCAATGTAGCTGGAAACCTTAAGGTTGCAGTAGCTGTGTTTGTTTCATGGATGATATT 839
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 780 ATTCAATGTAGCTGGAAACCTTAAGGTTGCAGTAGCTGTGTTGGTATCATGGATGATATT 839
Query 840 TCGAAA-CCCGATATCACCGATGAATGCTGTTGGCTGCGGAATCACACTTGTGGGCTGCA 898
| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 -CAAAAACCCGATATCACCGATGAATGCTGTTGGATGCGGAATCACACTTGTGGGCTGCA 898
Query 899 CCTTTTACGGATATGTAAGACACATGCTTTCTCAGCAACAACCCGGAACTCCTAGGACTC 958
||||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 899 CCTTTTATGGTTATGTAAGGCACATGCTTTCTCAGCAACAACCAGGAACTCCCAGGACTC 958
Query 959 CTCGTACCCCAAGGAACAAGATGGAACTGATCCCTCTTGTTAATGATAAACTCGAGAGTA 1018
|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 CTCGTAACCCAAGGAACAAGATGGAACTGATTCCTCTTGTTAATGATAAACTAGAGAGTA 1018
Query 1019 AAATTTGA 1026
|| |||||
Sbjct 1019 AAGTTTGA 1026
> Ahg476925 jgi|Araly1|476925|fgenesh2_kg.2__2055__AT1G77610.1
Length=1562
Score = 1050 bits (568), Expect = 0.0
Identities = 857/993 (86%), Gaps = 33/993 (3%)
Strand=Plus/Plus
Query 33 TATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCAT 92
||||||||||||||| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 288 TATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTCATCAT 347
Query 93 CATGAACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCATTATCAGTTTCATGTGT 152
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 348 CATGAACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGT 407
Query 153 TCATTTCATATGTTCGTCGATTGGAGCATACATTGTGATTAAAGT-CTTAAAGCTTAAAC 211
||| ||||||||||| ||||||||||| ||||| || || ||||| || || ||||||||
Sbjct 408 TCACTTCATATGTTCATCGATTGGAGCTTACATCGTTATCAAAGTTCTCAA-GCTTAAAC 466
Query 212 CTTTGATTGTGGTTGATCCAGAAGATAGGTGGAGGAGGATTTTTCCAATGTCATTT-GTG 270
| |||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 467 CATTGATTGTTGTTGA-CCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTC-TTTCGTG 524
Query 271 TTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATG 330
|| |||||||||||||||||||| ||| | |||||| ||||||||||||| || ||||||
Sbjct 525 TTTTGTATCAACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATG 584
Query 331 CAGACTATCAAATCTTTAACTCCTGCAACAACAGTTGTGTTACAGTGGTTGGTATGGAGG 390
||||| || |||||||| ||||| || || ||||| | | || || |||||||
Sbjct 585 CAGACGATTAAATCTTTCACTCCAGCTACTACAGT-G-GCTA--GT-------ATGGAGG 633
Query 391 AAATATTTTGATTGGCGTATTTGGGCGTCAT-TGGTGCCTATTGTTGGAGGGATTCTTCT 449
||||| ||||| ||||||||||||||||| | | ||||| |||||||| || ||||||||
Sbjct 634 AAATACTTTGACTGGCGTATTTGGGCGTC-TCTCGTGCCCATTGTTGGTGGAATTCTTCT 692
Query 450 TACTTCTATTACAGAACTTAGCTTTAATGTGTTTGGATTCTGTGCTGCTTTGTTTGGATG 509
|| ||| |||| |||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 693 GACCTCTGTTACCGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATG 752
Query 510 TTTAGCTACCTCTACAAAGACCATTCTTGCAGAATCTCTTCTTCATGGATACAAATTTGA 569
||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 753 TTTAGCTACTTCCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGA 812
Query 570 CAGCATAAACACGGTATACTATATGGCGCCTTTCGCGACCATGATTCTCGGGTTACCTGC 629
|||||||||||| |||||||||||||||||||| || |||||||| |||||| |||| ||
Sbjct 813 CAGCATAAACACTGTATACTATATGGCGCCTTTTGCCACCATGATCCTCGGGATACCAGC 872
Query 630 ATTTTTACTAGAAAGGAA-TGGAATTTTG-GATTGGTTTGAAGCACATCCAT-CTCCATG 686
| | ||||| ||| || | |||||||||| | ||||||||||||||| || | |||| ||
Sbjct 873 ACTATTACTGGAA-GGCAGTGGAATTTTGAG-TTGGTTTGAAGCACACCC-TGCTCCCTG 929
Query 687 GTCGGCTCTCATAATTCTTTTCAACTCAGGTGTTCTAGCTTTCTGTCTTAACTTCTCCAT 746
||| || ||||| ||| | |||| || ||||||||||| |||||||| |||||||||||
Sbjct 930 GTCAGCCCTCATCATTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCAT 989
Query 747 CTTCTATGTCATTCAATCCACAACAGCAGTCACATTCAATGTAGCTGGAAACCTTAAGGT 806
|||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 990 CTTCTACGTCATTCACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGT 1049
Query 807 TGCAGTAGCTGTGTTTGTTTCATGGATGATATTTCGAAACCCGATATCACCGATGAATGC 866
||| |||||||| || || |||||| ||||||| || ||||| ||||| ||||||||
Sbjct 1050 TGCCGTAGCTGTATTGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGC 1109
Query 867 TGTTGGCTGCGGAATCACACTTGTGGGCTGCACCTTTTACGGATATGTAAGACACATGCT 926
|||||| |||||||| || |||||||||||||| ||||| |||||||| || || |||||
Sbjct 1110 TGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCT 1169
Query 927 TTCTCAGCAA-CAACCCGGAACTCCTAGGACTCCTCGTACCCCAAGGAA-CAAGATGGAA 984
||| |||||| || || |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1170 TTCACAGCAAACA-CCGGGAACTCCTAGGACACCTCGTACCCCAAG-AAGCAAGATGGAA 1227
Query 985 CTGA-TCCCTCTTGTTAAT---GATAAACTCGA 1013
| | | |||||||||||| |||||||||||
Sbjct 1228 TT-ACTTCCTCTTGTTAATAATGATAAACTCGA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5