BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21880.2
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2 2285 0.0
Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708 811 0.0
> Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2
Length=1495
Score = 2285 bits (1237), Expect = 0.0
Identities = 1380/1449 (95%), Gaps = 9/1449 (1%)
Strand=Plus/Plus
Query 133 ACTCTCTGTCATTGTCCTGTAAGAGAAATTGAAAACCCTAGGAGATTTTGAATTTCGTAA 192
|||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 49 ACTCTCTGTCATTGTCCTCTAAGAGAGATTGAAAACCCTACGAGATTTTGAATTTCGTAA 108
Query 193 AACCCTAAAC-ACAAAAATGAAAATCCCAGAAAAACCCATCTTCTTAATCTTCGTCTCTT 251
|||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 109 AACCCTAAACTACTAAAATGAAAAACCCAGAAAAACCCATCTTCTTCTTCTTCGTCTCTC 168
Query 252 TGATCCTAGCTTCGAGCT-TAACCTTCACAGCGACAGCGAAATCAACAATCGAGCCTTGC 310
| || |||||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 169 TAATTCTAGCTTCGA-CTCTCGTCTTCACAGCTACAGCGAAATCAACAATCGAGCCTTGC 227
Query 311 TCAAGCAACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTC 370
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 228 TCAAGCAACGACACTTGCAACTCTTTACTCGGCTACACGCTCTACACCGACCTCAAAGTC 287
Query 371 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTA-TCCTTTTAGCTAACGCCAT 429
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 288 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTC-AGTCCTTTTAGCTAACGCCAT 346
Query 430 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAAT 489
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 347 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCAAAGCTCTTCCTCAAAAT 406
Query 490 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGAAAATCTGTCTCTACCCATTACAAAAC 549
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 407 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGGAAATCTGTCTCTACCCATTACAAAAC 466
Query 550 CCGACCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGCTTGGTCTCTGC 609
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 467 CCGACCTTCCGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGTTTGGTCTCTGC 526
Query 610 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGCTGCTTGATGTTGGGACTAG 669
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 527 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGTTGCTTGATGTTGGGACGAG 586
Query 670 TCTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCTGT 729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 587 TCTTGTTATCCCCTTGCCTTGCGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCGGT 646
Query 730 TTATTTGTCGTATGTTGTGAAGGAGATTGATACATTGGTCGGAATCGCGAGGAGGTATTC 789
||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||
Sbjct 647 TTATTTGTCGTATGTGGTTAGGGAGATTGATACATTGGTCGGAATTGCGAGGAGGTATTC 706
Query 790 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 766
Query 850 AGATATTCTCGCTGTTCCTTTGTCAGCTTGTGCTTCAAAGTTCCCCAGATACGCTTCGGA 909
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 767 AGATATTCTCGCTGTTCCTTTGTCAGCCTGTGCTTCAAAGTTCCCCAGATATGCATCGGA 826
Query 910 TTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCTAGCTGCAGGTCACTGTGTGCAATG 969
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 827 TTTCGGATTGATTGTTCCAAATGGTAGCTACGCTTTAGCTGCAGGTCATTGTGTGCAATG 886
Query 970 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCCGTCTCTTG 1029
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCTCTAGCCGTCTCTTG 946
Query 1030 CTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAG 1006
Query 1090 TAGCGCTGGCTGTAATGTTACAACTTGTGATTACAACGGTATAGCCAACGGCACTATCTT 1149
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1007 TAGCGCTGGCTGTAATGTTACAACCTGTGATTACAATGGTATTGCCAACGGCACTATCTT 1066
Query 1150 AACCATGCTGACCAGGTCTCTTCAACCTCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1209
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1067 GACCATGCTGACCAGGTCTCTTCAACCCCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1126
Query 1210 TCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGCACCAGCACCTTCACCAGA 1269
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1127 TCTAGCTCCACCGGATACTGTTCCTAAGGATGTAATGTATGCACCAGCACCTTCACCAGA 1186
Query 1270 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTATGCTTCCTGGTGGTGG 1329
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1187 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTGTGCTTCCTTCAGGCGG 1246
Query 1330 T-AT-CT-TGCCAGGTAATCCCGCTAATGGTCCAGCCGGTAGCATCTCAACCGCCTCTGC 1386
| || | | |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1247 TGATTCCGTCCCAGGTAACCCCGCTAATGGTCCAGCCGGTAGCATCTCAATCGCCTCTGC 1306
Query 1387 CTCCTCAGTTAGCTACTTCTTTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGC 1446
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTCCTCAGTTAGCTACTTCATTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGT 1366
Query 1447 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTAAAAACTCCTATGTGA 1506
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1367 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTGGAAACTCCTATGTGA 1426
Query 1507 AATTCTTGATGAGTAGAACCAAAACATTG-TTATTGATCTCTTTGATAATTTTTGAAGTT 1565
||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1427 AATTCTTGATGAGTAAAACCAAAACATTGGTTTTTGATCTCTTTGATAATATTTGAAGTT 1486
Query 1566 GCATATCTC 1574
|||||||||
Sbjct 1487 GCATATCTC 1495
> Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708
Length=1278
Score = 811 bits (439), Expect = 0.0
Identities = 841/1031 (82%), Gaps = 44/1031 (4%)
Strand=Plus/Plus
Query 258 TAGCTTCGAGCTTAACCTTC-ACAGCGACAGCGAAATCAACAATCGAGCCTTGCTCAAGC 316
||||||| ||||| | | || | ||||| |||||||| ||||| ||||||||||| | |
Sbjct 41 TAGCTTCAAGCTT-AGCATCAATGGCGACTGCGAAATCCACAATAGAGCCTTGCTCCA-C 98
Query 317 -AACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTCTCAGA 375
|| |||||||| ||| | || || |||||||| ||||||||||||||||||||| ||||
Sbjct 99 TAAAGACACTTGTAACTCATTGCTAGGCTACACGCTCTACACCGACCTCAAAGTCACAGA 158
Query 376 AGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTATCCTTTTAGCTAACGCCATCGATAT 435
|||||| ||||||||||||||||||||| |||| || ||| | ||||| |||| || ||
Sbjct 159 AGTCGCTTCTCTCTTCCAAGTAGACCCAGTCTCGATGCTTCTCTCTAACTCCATTGACAT 218
Query 436 CTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAATCCCAAT 495
|||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||
Sbjct 219 CTCTTACCCAGACGTCGAGAACCATGTCCTTCCCGCTAAGCTCTTCCTCAAAATCCCAAT 278
Query 496 CACTTGCTCCTGCGTCGACGGAAT-CAGAAAATCTGTCTCTACCCATTACAAAACCCG-A 553
|||||||||||| ||||||||||| | ||||||| |||| ||||||||||| || || |
Sbjct 279 CACTTGCTCCTGTGTCGACGGAATTC-GAAAATCCCTCTCGACCCATTACAAGACTCGTA 337
Query 554 CCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGG-CTTGGTCTCTGCTGA 612
| ||| |||| ||||||||||| ||||||||||||||||| || || ||||||| | ||
Sbjct 338 C-TTCCGACACGCTAGGATCGATCGCTGACTCTGTTTACGGTGGTCT-GGTCTCTCCGGA 395
Query 613 GCAGATCCAGGAAGCTAACTCGGTGAA-TGACC-CGTCGCTGCTTGATGTTGGGACTAGT 670
|||||| |||| || || |||| || ||||| | ||| | || ||||| || || ||
Sbjct 396 GCAGATTCAGGTCGCGAATTCGGA-AACTGACCTC-TCGGTTCTCGATGTAGGTACAAGG 453
Query 671 CTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGAC-AAT-TCTTTGCCGGCTG 728
||||| || || |||||||| ||||| |||||||| ||||| ||| |||| ||||| |
Sbjct 454 CTTGTGATTCCATTGCCTTGCGCTTGCTTCAATGGTACCGATGAATCTCTT--CCGGC-G 510
Query 729 -TTTATTTGTCGTATGTTGTGAAGGAGATT-GATACATTGG-TCGGAATCGCGAGGAGGT 785
||||| | || || ||||||| || || | || ||| ||| | |||||||| | ||| |
Sbjct 511 CTTTATCTATCTTACGTTGTGAGGG-GAATCGACACAATGGCT-GGAATCGCAAAGAGAT 568
Query 786 AT-TCGACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGT 844
| ||||| ||| |||| ||||| | ||||||||||| ||||||||||||||| | | |
Sbjct 569 -TCTCGACCACTGTTACGGATTTAACAAATGTGAATGCGATGGGAGCTCCTGATATCAAT 627
Query 845 TCTGGAGATATTCTCGCTGTTCCTTTG-TCAGCTTGT-GCTTCAAAGTTCCCCAGATACG 902
|||| ||||| |||||||| || ||| | |||||| | |||||| ||||||| |||||
Sbjct 628 CCTGGTGATATCCTCGCTGTCCCATTGCTT-GCTTGTAG-TTCAAATTTCCCCAAATACG 685
Query 903 CTTCGGATTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCT-AGCTGCAGGTCACTGT 961
|| |||||| ||||||||| ||||||| || ||||||||||| | | ||||| ||||||
Sbjct 686 CTACGGATTACGGATTGATCATTCCAAACGGAAGCTATGCTCTCACC-GCAGGCCACTGT 744
Query 962 GTGCAATGCAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCC 1021
|| ||||||||||||| || || ||||||| | ||||||||||||||||||| ||||
Sbjct 745 GTACAATGCAGCTGTGTTCTCGGAAGCCGCAGTATGTATTGTGAGCCTGCTTCTTTAGCA 804
Query 1022 GTCTCTTGCTCAAGTATGC-AGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGT 1080
|||||||| || ||||||| | ||||||||||||||| |||||||||| |||||||| |
Sbjct 805 GTCTCTTGTTCCAGTATGCGA-TGTAGAAACAGCAACTTCATGCTCGGGAACATCACT-T 862
Query 1081 -GCAGCAGACTAGCGCTGGCTGTAATGTTACAACTTGT-GATTACAACGGTATAGCCAAC 1138
|||||||| |||| | || ||||| |||| |||||| | |||||||||| | || | |
Sbjct 863 CGCAGCAGAGTAGCTCGGGTTGTAAACTTACTACTTGTAG-TTACAACGGTTTCGCTAGC 921
Query 1139 GGCACTATCTTAACCATGCTGA-CCAGGTCTCTTCAACCTCGATGTCCC-GGACCTCAAC 1196
||||||||||| |||| | | | ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 922 GGCACTATCTTGACCACGTT-ATCCATGTCTCTTCAACCTCGATG-CCCTGGACCGCAAC 979
Query 1197 AATTTGCGCCGCTTCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGC-ACCA 1255
|||| || |||||| |||| || || ||||||||||| | ||| | |||||| | |||
Sbjct 980 AATTAGCACCGCTTATAGCCCCGCCTGATACTGTTCCAAAGGAACTGATGTAT-CTACCT 1038
Query 1256 GCACCTTCACC 1266
||||||||||
Sbjct 1039 TCACCTTCACC 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5