BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21890.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313081 jgi|Araly1|313081|fgenesh1_pm.C_scaffold_1001861 1796 0.0
> Ahg313081 jgi|Araly1|313081|fgenesh1_pm.C_scaffold_1001861
Length=1155
Score = 1796 bits (972), Expect = 0.0
Identities = 1090/1147 (95%), Gaps = 8/1147 (1%)
Strand=Plus/Plus
Query 82 atg-gggagagGGTTAATGAATAGTTTGAAACCATACTTAGCAATGATATCTATGCAGTT 140
||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTGGG-GAGGGTTAATGAATAGTGTAAAACCATACTTAGCAATGATATCTATGCAATT 59
Query 141 TGGTTATGCCGGTATGTACATAATCACCATGGTCTCTCTTAAGCATGGCATGAACCATTA 200
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TGGTTATGCCGGTATGTACATAATTACCATGGTCTCTCTTAAGCATGGCATGAACCATTA 119
Query 201 CGTCCTAGCCGTTTATCGCCATGCAATTGCCACTGCCGTCATCGCTCCATTTGCTCTTTT 260
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CGTCCTAGCCGTTTATCGCCATGCAATTGCCACTGCCGTCATCGCTCCGTTTGCTCTTTT 179
Query 261 CCATGAAAGGAAAATAAGGCCCAAGATGACGTTCCGAATATTCCTCCAAATTGCGCTGCT 320
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 TCATGAAAGGAAAATAAGGCCCAAGATGACATTCCGAATATTTCTCCAAATTGCGCTGCT 239
Query 321 CGGTTTTATTGAGCCGGTGCTTGATCAGAACCTCTACTACGTCGGGATGACTTACACGTC 380
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGTTTTATTGAGCCGGTGCTGGATCAGAACCTCTACTACGTCGGGATGACTTACACGTC 299
Query 381 AGCAACTTTCGCTTCTGCTACTGCTAATGTCCTTCCGGCCATCACCTTCGTCTTGGCCAT 440
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCAACTTTCGCTTCGGCTACCGCTAATGTCCTTCCGGCCATCACCTTCGTCTTGGCCAT 359
Query 441 TATTTTCAGGTTAGAAAGCGTGAACTTTAAGAAGGTACGAAGCATAGCCAAAGTTGTAGG 500
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATTTTCAGATTAGAGAGCGTGAACTTTAAGAAGGTACGAAGCATAGCCAAAGTTGTAGG 419
Query 501 AACGGTGATCACAGTCTCCGGAGCACTTCTCATGACTCTCTACAAGGGTCCAATAGTTGA 560
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 420 AACGGTGATCACAGTCTCCGGAGCACTTCTCATGACTCTCTACAAAGGTCCAATAATTGA 479
Query 561 CTTTATCCGATTCGGCGGTGGAGGAGGAGGAGGTAGTGATGGTGCAGGAGGATCCCACGG 620
|||||| ||||||||||||| ||||||||| | ||||| ||||| |||| | |
Sbjct 480 CTTTATAAGATTCGGCGGTGGCGGAGGAGGAAGCAGTGACGGTGC------CTCCCGCAG 533
Query 621 TGGTGCAGGAGCGGCAGCGATGGACAAACACTGGATTCCGGGAACACTTATGCTGTTGGG 680
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGGTGCATCAGCGGCGGCGTTGGACAAACACTGGATTCCGGGAACACTTATGCTGTTGGG 593
Query 681 AAGAACTTTTGGTTGGGCCGGTTTCTTCATCCTACAATCGTTTACACTGAAGCAGTACCC 740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 594 AAGAACTTTTGGTTGGGCCGGTTTCTTCATCCTACAATCGTTTACACTGAAGAAGTATCC 653
Query 741 AGCTGAGCTGTCATTAACGACGTTAATATGTTTAATGGGAACGTTAGAAGGAACCGCTGT 800
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 654 AGCTGAGCTGTCACTAACGACGTTAATATGTTTAATGGGAACTTTAGAAGGAACCGCCGT 713
Query 801 TTCATTGGTAACGGTACGTGACTTGAGTGCTTGGAAAATCGGCTTCGACTCTAATCTCTT 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTCATTGGTAACGGTACGTGACTTGAGTGCTTGGAAAATCGGCTTCGACTCTAATCTCTT 773
Query 861 CGCCGCTGCTTACTCCGGGGTGATTTGTTCGGGAGTGGCGTATTACGTGCAAGGAGTAGT 920
||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 774 CGCTGCTGCCTACTCCGGGGTGATATGTTCGGGTGTGGCGTATTACGTGCAAGGAGTAGT 833
Query 921 AATGAGAGAAAGAGGACCAGTTTTTGTTGCGACATTTAATCCACTTTGTGTCGTTATAAC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AATGAGAGAAAGAGGACCAGTTTTTGTTGCGACATTTAATCCACTTTGTGTCGTTATAAC 893
Query 981 TGCTGCTCTTGGTGTTGTTGTCTTGTCTGAAAGCATTCATCTCGGAAGTGTGATTGGAAC 1040
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 894 TGCTGCTCTTGGTGTTGTTGTCTTGTCCGAAAGTATTCATCTCGGAAGTGTGATTGGAAC 953
Query 1041 GCTATTTATAATCGTGGGCCTATACACTGTTGTATGGGGTAAAGGCAAAGACAAAAGAAT 1100
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTTATTTATAATCGTGGGCCTATACACTGTTGTATGGGGTAAAGGCAAAGACAAAAGAAT 1013
Query 1101 GACGGATGATGACGAAGATTGCAAAGGACTTCCGATTAAAAGTCCGGTTAAACCGGTAGA 1160
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1014 GACGGATGATGACGAAAATTGCAAAGGACTTCCGATTAAAACTCCGGTTAAACAGGTAGA 1073
Query 1161 TACCGGTAAAGGCTTAGCCGCAGAACTGGAGATGAAATCAAAGGAAGGTCAAGAGGCAAA 1220
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||| | ||
Sbjct 1074 TACCGGTAAAGGCTTAGCCGGAGAACTGGAGATGAAACCTAAGGAAGGTCAAGAGACTAA 1133
Query 1221 GGCTACT 1227
|||||||
Sbjct 1134 GGCTACT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5