BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21900.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921175 jgi|Araly1|921175|scaffold_102456.1 1086 0.0
> Ahg921175 jgi|Araly1|921175|scaffold_102456.1
Length=696
Score = 1086 bits (588), Expect = 0.0
Identities = 663/699 (95%), Gaps = 5/699 (1%)
Strand=Plus/Plus
Query 87 AGAAGAAGACCATCGTTGTTCTCCGATGGCTATTAACAGAATTGCTCATGGTTC-TCTGT 145
||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1 AGAAGAAGACCGTCGTTGTTCTCCGATGGCGATTAATAGAATTGCTCATGGTTCGAGGGT 60
Query 146 TTCTGACGGTAGTCTTGTTCTT-TCTGACGGTTAATTACGGCGAAGCTATATGGTTGACG 204
|| || | || || |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 61 TT-TGGCAGTTGTATTGTTCTTGT-TGACGGTTAATTACGGCGAAGCTATATGGTTGACG 118
Query 205 ATTCCGACGACGGGTGGAACGAAGTGTGTCTCCGAGGAGATACAGAGCAACGTCGTCGTT 264
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTCCGACGACGGGAGGGACGAAGTGTGTCTCCGAGGAGATACAGAGCAACGTCGTCGTT 178
Query 265 TTGGCTGATTACTATGTCGTCGATGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCT 324
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 179 TTGGCTGATTACTATGTCGTCGATGAGCATAATCCTGAAAACACTCCTGCTGTTTCTTCT 238
Query 325 AAGGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAG 384
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGGTAACATCTCCTTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAG 298
Query 385 TTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTTTCTGGATTGATTCCAGT 444
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TTTGCGTTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTTTCTGGATTGATTCCACT 358
Query 445 CATCACTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCTAAA 504
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 CATCCCTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCCAAA 418
Query 505 GACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGGGTGTTGAGCTTCAGTTGAGGAGA 564
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGGGTGTTGAGCTTCAGTTGAGGAGA 478
Query 565 CTTGAAGGGTTGGTGCTGTCGATTCGTGAGAACTTAAACTATATAAAAGACAGGGAAGCG 624
||||||||||| |||| |||||||||||||||| |||| || ||||||||||||||||||
Sbjct 479 CTTGAAGGGTTAGTGCAGTCGATTCGTGAGAACATAAATTACATAAAAGACAGGGAAGCG 538
Query 625 GAGATGCGAGAAGTGAGTGAAACAACCAACTCAAGAGTGGCTTGGTTCAGTATAATGTCA 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGATGCGAGAAGTGAGTGAAACAACCAACTCAAGAGTGGCTTGGTTCAGTATAATGTCA 598
Query 685 CTCGGGGTTTGCGTTGTGGTTGTGGGTTCACAGATACTGTATCTGAAGAGGTATTTCCAC 744
|||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||
Sbjct 599 CTCGGGGTTTGCGTTGTGGTTGCAGGTACACAGATATTGTATCTGAAGCGGTATTTCCAC 658
Query 745 AAGAAGAAACTTATCTAGAAACTTGGCCTGAAGGATACT 783
||||||||||| ||||| |||||||||||||||||||||
Sbjct 659 AAGAAGAAACTCATCTA-AAACTTGGCCTGAAGGATACT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5